Commits for cvaske

155aea7ccb73e2e11ce80d93c44f7502f39ea617 Tue Feb 11 15:42:35 2025 -0800

CIViC cancer variant track: fix DOID parsing The doid column of several tables looks a lot like a number, but many entries have leading zeroes. Pandas was reading the entire column as integer. The parsing command was changed to force the `doid` column to be treated as a string.
- src/hg/utils/otto/civic/civicToBed.py - lines changed 6, context: html, text, full: html, text

92cebf70e231042c0a994708fd8e2f850e71844a Tue Feb 11 16:04:45 2025 -0800

CIViC variant track: disease parsing Handle any cases that may come up with disease names that include commas
- src/hg/utils/otto/civic/civicToBed.py - lines changed 2, context: html, text, full: html, text

3bbcbf1c3ac0742cafa3eb6fb2bcdfe7c51fde52 Tue Feb 11 16:06:26 2025 -0800

CIViC variant track: disease parsing Handle any cases that may come up with disease names that include commas
- src/hg/utils/otto/civic/civicToBed.py - lines changed 2, context: html, text, full: html, text

7036c1da9c97c601feeb085f3e39389dd5d761ab Wed Feb 12 14:06:44 2025 -0800

CIViC: fix ClinVar links
- src/hg/makeDb/trackDb/human/civic.ra - lines changed 1, context: html, text, full: html, text
- src/hg/utils/otto/civic/civic.as - lines changed 2, context: html, text, full: html, text