f4a0cd933ac7de57b77e8376123c4a14e594152a gperez2 Thu Feb 6 17:02:05 2025 -0800 Updating the SpliceVarDB methods section, refs #34424 diff --git src/hg/makeDb/trackDb/human/spliceImpactSuper.html src/hg/makeDb/trackDb/human/spliceImpactSuper.html index 242e7284c6b..902365f176d 100644 --- src/hg/makeDb/trackDb/human/spliceImpactSuper.html +++ src/hg/makeDb/trackDb/human/spliceImpactSuper.html @@ -63,30 +63,32 @@ can be downloaded from our download server. The file for this track is called SVADB.bb. Individual regions or the whole genome annotation can be obtained using our tool bigBedToBed which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found here. The tool can also be used to obtain only features within a given range, e.g. bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/splicevardb/SVADB.bb -chrom=chr21 -start=0 -end=100000000 stdout

Methods

-

The data was converted by Patricia Sullivan from SpliceVarDb within a few -hours to bigLolly format and the UCSC Browser staff needed nothing else to do but to downloaded the data.

+

+The data was converted by Patricia Sullivan from SpliceVarDB to bigLolly format, and the UCSC +Browser staff downloaded it for display. +

Credits

Thanks to the SpliceVarDB team for converting the data into our data formats.

References

Sullivan PJ, Quinn JMW, Wu W, Pinese M, Cowley MJ. SpliceVarDB: A comprehensive database of experimentally validated human splicing variants. Am J Hum Genet. 2024 Oct 3;111(10):2164-2175. PMID: 39226898; PMC: PMC11480807