7e56337aaaae09a348dd7393fef23300d3404212
hiram
  Tue Mar 11 15:32:39 2025 -0700
custom description comments on fields for NCBI RefSeq track refs #34704

diff --git src/hg/lib/bigGenePredRefSeq.as src/hg/lib/bigGenePredRefSeq.as
new file mode 100644
index 00000000000..d5a6e0c8175
--- /dev/null
+++ src/hg/lib/bigGenePredRefSeq.as
@@ -0,0 +1,25 @@
+table bigGenePredNcbiRefSeq
+"bigGenePredNcbiRefSeq gene models"
+   (
+   string chrom;       "Reference sequence chromosome or scaffold"
+   uint   chromStart;  "Start position in chromosome"
+   uint   chromEnd;    "End position in chromosome"
+   string name;        "Name or ID of item, ideally both human readable and unique"
+   uint score;         "Score (0-1000)"
+   char[1] strand;     "+ or - for strand"
+   uint thickStart;    "Start of where display should be thick (start codon)"
+   uint thickEnd;      "End of where display should be thick (stop codon)"
+   uint reserved;       "RGB value (use R,G,B string in input file)"
+   int blockCount;     "Number of blocks"
+   int[blockCount] blockSizes; "Comma separated list of block sizes"
+   int[blockCount] chromStarts; "Start positions relative to chromStart"
+   string name2;       "Gene symbol"
+   string _cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)"
+   string _cdsEndStat;   "Status of CDS end annotation (none, unknown, incomplete, or complete)"
+   int[blockCount] _exonFrames; "Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region."
+   string type;        "Transcript biotype: protein_coding, pseudogene, lncRNA, etc . . ."
+   string geneName;    "NCBI Gene ID"
+   string geneName2;   "Transcript accession"
+   string geneType;    "Gene type: mRNA, gene, lnc_RNA, pseudogene, transcript, etc . . ."
+   )
+