d5fe70b3e6a9a2ce1fa0557ec745fa83ac9075f2 hiram Wed Feb 26 11:19:30 2025 -0800 VGP update no redmine diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 463398cbc5b..497d51d8f55 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -79,30 +79,31 @@ 386614 GCA_010909765.1_sAmbRad1.pri sharks 7757 GCA_010993595.1_kPetMar1.alt otherChordates 8010 GCA_011004835.1_fEsoLuc1.alt fish 8010 GCA_011004845.1_fEsoLuc1.pri fish 100784 GCA_011004865.1_bBalReg1.alt birds 100784 GCA_011004875.1_bBalReg1.pri birds 9483 GCA_011078405.1_mCalJac1.mat primates 9483 GCA_011100535.1_mCalJac1.pat primates 9483 GCA_011100535.2_mCalJac1.2.pat primates 9483 GCA_011100555.1_mCalJac1.pat.X primates 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals 61156 GCA_011762505.2_mArvNil1.pat.X mammals +61156 GCA_011762505.3_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds 882753 GCA_013347815.1_fAntMac1.alt fish 8005 GCA_013347915.1_fEleEle1.alt fish 882753 GCA_013358685.1_fAntMac1.pri fish 118141 GCA_013368575.1_fMegCyp1.alt fish 48427 GCA_013368595.1_bNycGra1.alt birds 48427 GCA_013368605.1_bNycGra1.pri birds 59479 GCA_014108255.1_mRhiFer1.p mammals 2767082 GCA_014706295.1_ASM1470629v1 birds @@ -174,37 +175,37 @@ 9430 GCA_022682395.1_HLdesRot8B mammals 9430 GCA_022682395.2_HLdesRot8B.1 mammals 9430 GCA_022682495.1_HLdesRot8A mammals 9430 GCA_022682495.2_HLdesRot8A.1 mammals 159646 GCA_023053635.1_rElgMul1.0.p reptiles 159646 GCA_023053635.2_rElgMul1.1.pri reptiles 2917703 GCA_023333525.1_rAspTig1.0.p reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds +46513 GCA_023637945.2_bPhaSup1.pri birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals 99487 GCA_024166345.1_mEleMax1_alternate_haplotype mammals 9031 GCA_024206055.2_GGswu birds -9031 GCA_024206055.2_ASM2420605v2 birds 246179 GCA_024294585.1_rVipLat1.pri reptiles 246179 GCA_024294605.1_rVipLat1.alt reptiles 58319 GCA_024453875.1_ASM2445387v1 fish 10013 GCA_024803745.1_mThoBot1.0.p mammals 48708 GCA_025094165.1_mMesDen1_alternate_haplotype mammals 286002 GCA_025201965.1_rGopFla2.pat.asm reptiles 48708 GCA_025265405.1_mMesDen1_primary_haplotype mammals 70687 GCA_026018925.1_mTupTan1 mammals 372063 GCA_026229955.1_mPerMan1.0.p mammals 124745 GCA_026230045.1_mCorTow1.0.hap2 mammals 202280 GCA_026419925.1_bHarHar1 birds 27615 GCA_026419965.1_mKogBre1_haplotype_1 mammals 27615 GCA_026419985.1_mKogBre1_haplotype_2 mammals 8319 GCA_026652325.1_ASM2665232v1 amphibians 2997257 GCA_026936385.1_BBF_mMolNig1_v1 mammals @@ -288,30 +289,31 @@ 9597 GCA_028858825.2_NHGRI_mPanPan1-v2.0_pat primates 9590 GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt primates 9590 GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt primates 9595 GCA_028885475.2_NHGRI_mGorGor1-v2.0_pat primates 9600 GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates 9600 GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt primates 9601 GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt primates 2202111 GCA_029215775.1_rAnnSte1.0.hap1 reptiles 2202111 GCA_029215795.1_rAnnSte1.0.hap2 reptiles 9595 GCA_029281585.3_NHGRI_mGorGor1-v2.1_pri primates 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633855.2_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish +27720 GCA_029633875.2_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish 2290929 GCA_030015355.1_fTriRos1.hap2 fish 94835 GCA_030020295.1_rGavGan2.hap2 reptiles 9785 GCA_030020305.1_mLoxAfr1.hap1 mammals 94835 GCA_030020385.1_rGavGan2.hap1 reptiles 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals 1983395 GCA_030028105.1_sMobBir1.hap1 sharks 29137 GCA_030035585.1_mDugDug1.hap1 mammals 261503 GCA_030035675.1_rRhiFlo1.hap2 reptiles 1983395 GCA_030035685.1_sMobBir1.hap2 sharks 261503 GCA_030035715.1_rRhiFlo1.hap1 reptiles @@ -404,30 +406,31 @@ 48849 GCA_036417665.1_bPasDom1.hap1 birds 2696672 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