1cfcd358bab5bee746cb33e15fc861f6206835b6 jcasper Sun Mar 2 09:35:30 2025 -0800 Gotta run cluster jobs on hgwdev instead of ku for a bit, and s-nail wants spaces instead of commas in the recipients list, refs #35189 diff --git src/hg/utils/otto/knownGene/buildBlast.sh src/hg/utils/otto/knownGene/buildBlast.sh index f72f8564dc4..c9c159efde9 100755 --- src/hg/utils/otto/knownGene/buildBlast.sh +++ src/hg/utils/otto/knownGene/buildBlast.sh @@ -27,31 +27,31 @@ ${tempDb}Fa $tempFa ${xdb}Fa $xdbFa ${ratDb}Fa $ratFa ${fishDb}Fa $fishFa ${flyDb}Fa $flyFa ${wormDb}Fa $wormFa ${yeastDb}Fa $yeastFa buildDir $dir/hgNearBlastp scratchDir $scratchDir/brHgNearBlastp ThisEnd ) > config.ra rm -rf $scratchDir/brHgNearBlastp -doHgNearBlastp.pl -noLoad -clusterHub=ku -distrHost=hgwdev -dbHost=hgwdev -workhorse=hgwdev config.ra +doHgNearBlastp.pl -noLoad -clusterHub=hgwdev -distrHost=hgwdev -dbHost=hgwdev -workhorse=hgwdev config.ra # Load self cd $dir/hgNearBlastp/run.$tempDb.$tempDb # builds knownBlastTab ./loadPairwise.csh cd $dir/hgNearBlastp/run.$tempDb.$xdb hgLoadBlastTab $tempDb $xBlastTab -maxPer=1 out/*.tab cd $dir/hgNearBlastp/run.$tempDb.$ratDb hgLoadBlastTab $tempDb $rnBlastTab -maxPer=1 out/*.tab # Remove non-syntenic hits for human and rat # Takes a few minutes mkdir -p /gbdb/$tempDb/liftOver rm -f /gbdb/$tempDb/liftOver/${tempDb}To$RatDb.over.chain.gz /gbdb/$tempDb/liftOver/${tempDb}To$Xdb.over.chain.gz