6ba0ee7febe62b7a05c0fa5b93a96d0b2ecdb5eb mspeir Wed Feb 26 15:44:36 2025 -0800 changing double quotes to html encoding for code review, refs #35250 diff --git src/hg/htdocs/FAQ/FAQblat.html src/hg/htdocs/FAQ/FAQblat.html index b52bb586743..6c3ce9d647c 100755 --- src/hg/htdocs/FAQ/FAQblat.html +++ src/hg/htdocs/FAQ/FAQblat.html @@ -514,21 +514,21 @@ <p> If the permissions indicate something like: <code>-rw-rw-r--</code>, then you will need to enable the ability to execute the program: <pre><code>$ chmod +x blat</code></pre> <p> To confirm that it works, run the program without arguments. This will also display the help message. <pre><code>$ ./blat</code></pre> <p> You can now use this program locally on your sequences. For example, given a sample.fa, to find that sequence in the human/hg38 genome, you would run: <pre><code>$ ./blat hg38.2bit sample.fa output.psl</code></pre> <p> You can download the 2bit file for your assembly of interest from the <a href="https://hgdownload.soe.ucsc.edu/downloads.html">download server</a> -under the "Genome sequence files and select annotations (2bit, GTF, GC-content, etc)" link. -For example, the hg38.2bit sequence can be found <a +under the "Genome sequence files and select annotations (2bit, GTF, +GC-content, etc)" link. For example, the hg38.2bit sequence can be found <a href="https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/">here</a>. <!--#include virtual="$ROOT/inc/gbPageEnd.html" --> </body>