File Changes for hiram

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v479_preview to v479_preview2 (2025-03-03 to 2025-03-10) v479

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src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 3, context: html, text, full: html, text
  9db233549227d140513eb98a11f170865218bf9b Mon Mar 3 23:08:01 2025 -0800
  adding 3 per user request refs #29545
- lines changed 12, context: html, text, full: html, text
  f44053f200533c80ccdb790cd5943f3cbf105bd6 Wed Mar 5 08:10:24 2025 -0800
  adding one per user request and VGP update refs #29545
- lines changed 2, context: html, text, full: html, text
  514c98eac288e3dbfd53077dcc9f89d3c384a39b Thu Mar 6 20:41:54 2025 -0800
  one per user update and VGP update refs #29545
- lines changed 45, context: html, text, full: html, text
  66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
  RefSeq update refs #29545
src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  f44053f200533c80ccdb790cd5943f3cbf105bd6 Wed Mar 5 08:10:24 2025 -0800
  adding one per user request and VGP update refs #29545
src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
- lines changed 5, context: html, text, full: html, text
  854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
  VGP update refs #29545
- lines changed 2, context: html, text, full: html, text
  66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
  RefSeq update refs #29545
src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
  VGP update refs #29545
- lines changed 5, context: html, text, full: html, text
  66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
  RefSeq update refs #29545
src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  514c98eac288e3dbfd53077dcc9f89d3c384a39b Thu Mar 6 20:41:54 2025 -0800
  one per user update and VGP update refs #29545
- lines changed 18, context: html, text, full: html, text
  66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
  RefSeq update refs #29545
src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
- lines changed 7, context: html, text, full: html, text
  66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
  RefSeq update refs #29545
src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
- lines changed 3, context: html, text, full: html, text
  854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
  VGP update refs #29545
- lines changed 1, context: html, text, full: html, text
  514c98eac288e3dbfd53077dcc9f89d3c384a39b Thu Mar 6 20:41:54 2025 -0800
  one per user update and VGP update refs #29545
- lines changed 15, context: html, text, full: html, text
  66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
  RefSeq update refs #29545
src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
- lines changed 3, context: html, text, full: html, text
  9db233549227d140513eb98a11f170865218bf9b Mon Mar 3 23:08:01 2025 -0800
  adding 3 per user request refs #29545
- lines changed 2, context: html, text, full: html, text
  854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
  VGP update refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
- lines changed 7, context: html, text, full: html, text
  589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
  VGP update refs #34370
- lines changed 5, context: html, text, full: html, text
  1412b159bb0149d6c9a2298e9ba925f15a4b0c09 Wed Mar 5 12:26:49 2025 -0800
  VGP update almost up to date refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
  VGP update refs #34370
src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
- lines changed 15, context: html, text, full: html, text
  589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
  VGP update refs #34370
- lines changed 8, context: html, text, full: html, text
  1412b159bb0149d6c9a2298e9ba925f15a4b0c09 Wed Mar 5 12:26:49 2025 -0800
  VGP update almost up to date refs #29545
src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
- lines changed 16, context: html, text, full: html, text
  589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
  VGP update refs #34370
src/hg/utils/automation/asmHubTrackDb.sh
- lines changed 3, context: html, text, full: html, text
  cd52f66464cce415303d7ae24ba28603c927ee4f Thu Mar 6 15:39:33 2025 -0800
  better names in ncbiRefSeq track fields and updated related trackDb URLs refs #32704
src/hg/utils/automation/doNcbiRefSeq.pl
- lines changed 12, context: html, text, full: html, text
  cd52f66464cce415303d7ae24ba28603c927ee4f Thu Mar 6 15:39:33 2025 -0800
  better names in ncbiRefSeq track fields and updated related trackDb URLs refs #32704
src/hg/utils/automation/updateName2.pl
- lines changed 131, context: html, text, full: html, text
  e7dfb28b932077142b9e5db6f43a21ddbd32e7fa Thu Mar 6 09:36:52 2025 -0800
  function to update column 18 of bigGenePred to be GeneID for link to NCBI refs #34704
- lines changed 5, context: html, text, full: html, text
  b4924336d330068ac4c39222f6cd730d33f486a1 Thu Mar 6 15:35:53 2025 -0800
  can also fixup geneName2 when transition takes place refs #32704

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