Commits for gperez2

b7617abed29abc5f50b1a22b1d282e043ae77a52 Mon Mar 31 15:35:38 2025 -0700

Announcing the release of the hg38 Pseudogenes track, refs #30563
- src/hg/htdocs/goldenPath/newsarch.html - lines changed 41, context: html, text, full: html, text
- src/hg/htdocs/images/newsArchImages/Pseudogenes.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
- src/hg/htdocs/indexNews.html - lines changed 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra - lines changed 1, context: html, text, full: html, text

ff6f53780763ad8defc98f6d3f52e134024d0df5 Tue Apr 1 00:19:26 2025 -0700

Updating the Pseudogenes newsArch track image, refs #30563
- src/hg/htdocs/goldenPath/newsarch.html - lines changed 2, context: html, text, full: html, text
- src/hg/htdocs/images/newsArchImages/PseudogenesTrack.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

7ae31b7f204c16809e8c201af7a26a33bf4a20df Tue Apr 1 14:18:30 2025 -0700

Adding more info for the grey blocks and updating the text for the color-coded pseudogene types, refs #30563
- src/hg/htdocs/goldenPath/newsarch.html - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/pseudogenes.html - lines changed 7, context: html, text, full: html, text

4c08e95f2e342747adc45d6af6a3d70d4242c440 Tue Apr 1 14:47:42 2025 -0700

Removing hgdownload-euro.soe.ucsc.edu since Erich shares that is redundant to genome-euro.ucsc.edu, No RM
- src/utils/qa/checkHTTPS - lines changed 1, context: html, text, full: html, text

cb1c4abd76722d2f3dc7e767022b7b812573ec5a Wed Apr 2 16:40:10 2025 -0700

Updating the cron since the , is causing issues, No RM
- src/hg/utils/otto/lrg/lrgWrapper.sh - lines changed 1, context: html, text, full: html, text

2afb0b02aca7612ab8dc1bc6c7751eacd16f5c59 Thu Apr 3 09:32:12 2025 -0700

Adding Alignment Gap/Insertion Display settings for the GRC Patches composite track that are default in both Fix Patches and Alt Haplotypes track, refs #35326
- src/hg/makeDb/trackDb/patchTracks.new.ra - lines changed 2, context: html, text, full: html, text

a89d2c4aa3a3c6462db0f6d964463f26d0d9a48c Thu Apr 3 17:19:29 2025 -0700

Adding the gateway tutorial js file, refs #35464
- src/hg/js/tutorials/gatewayTutorial.js - lines changed 122, context: html, text, full: html, text

84655d205f74a77b773c1b25e89a42e37d913158 Sat Apr 5 17:03:53 2025 -0700

mm39 to platypus (GCF_004115215.2) lastz/chain/net run for user, refs #35448
- src/hg/makeDb/doc/mm39/lastzRuns.txt - lines changed 85, context: html, text, full: html, text