7ae31b7f204c16809e8c201af7a26a33bf4a20df gperez2 Tue Apr 1 14:18:30 2025 -0700 Adding more info for the grey blocks and updating the text for the color-coded pseudogene types, refs #30563 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 19bf3c72cbb..1138a149ab5 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -74,32 +74,32 @@ target="_blank">PseudoPipe</a>, a homology-based computational pipeline that searches a mammalian genome and identifies pseudogene sequences.</p> <p> This composite track consists of two subtracks: the <b>Pseudogene Parents</b> track and the <b>Pseudogenes</b> track.</p> <ul> <li><b>Pseudogene Parents</b> – This track displays parent genes labeled with their HUGO IDs, which were derived from Ensembl gene IDs provided by the Gerstein lab after dataset creation. It includes indicators for pseudogenes, each linked to its corresponding entry in the Pseudogenes track. <b><font color="#800080">Parent genes</font></b> are shown with their associated pseudogenes represented as <b><font color="#A9A9A9">grey</font></b> blocks. <li><b>Pseudogenes</b> – This track displays pseudogenes labeled with their parent HUGO ID and the pseudogenes are color-coded by pseudogene type: <b><font color="#FF8C00">unspecified pseudogene</font></b>, <b><font - color="#0000FF">processed pseudogene</font></b>, and - <b><font color="#556B2F">unprocessed pseudogene</font></b>. + color="#0000FF">unprocessed pseudogene</font></b>, and + <b><font color="#556B2F">processed pseudogene</font></b>. </ul> <div class="text-center"> <a href="https://genome.ucsc.edu/s/gperez2/Pseudogenes" target="_blank"> <img src="../images/newsArchImages/PseudogenesTrack.jpg" alt="hg38 session visualizing the Pseudogenes track" width='80%'></a> </div> <p> More information on this composite track can be found on the <a href="/cgi-bin/hgTrackUi?db=hg38&g=pseudogenes&position=default#TRACK_HTML" target="_blank">track description</a> page. </p> <p> We would like to thank the Gerstein lab at Yale University for making this data available, and Cristina Sisu for providing data in GTF format with parent annotations. We would also like to thank Jeltje van Baren, Mark Diekhans, and Gerardo Perez for their efforts on this release.