src/hg/makeDb/doc/asmHubs/hubIndex.pl f7738bbbaf7e4795de4aca61f476d1ddfe127e21

f7738bbbaf7e4795de4aca61f476d1ddfe127e21
hiram
  Sun Apr 6 22:00:59 2025 -0700
reset scripts to function on hgdownload3 no redmine

diff --git src/hg/makeDb/doc/asmHubs/hubIndex.pl src/hg/makeDb/doc/asmHubs/hubIndex.pl
index 84e6f5b6962..d7806abcb53 100755
--- src/hg/makeDb/doc/asmHubs/hubIndex.pl
+++ src/hg/makeDb/doc/asmHubs/hubIndex.pl
@@ -1,32 +1,30 @@
 #!/usr/bin/env perl
 
 use strict;
 use warnings;
 use File::Basename;
 
-my $thisMachine = `uname -n`;
+my $thisMachine = `hostname -s`;
 chomp $thisMachine;
 
 if ($thisMachine ne "hgdownload") {
-  if ($thisMachine ne "hgdownload1" && $thisMachine ne "hgdownload2") {
-    if ($thisMachine ne "hgdownload1.soe.ucsc.edu") {
-     printf STDERR "# NOTE: This script is only used on hgdownload\n";
+  if ($thisMachine ne "hgdownload1" && $thisMachine ne "hgdownload2" && $thisMachine ne "hgdownload3") {
+     printf STDERR "# NOTE: This script is only used on hgdownload[123]\n";
      exit 255;
   }
 }
-}
 
 #############################################################################
 sub startHtml() {
 printf '<!DOCTYPE HTML 4.01 Transitional>
 <!--#set var="TITLE" value="GenArk: UCSC Genome Archive" -->
 <!--#set var="ROOT" value=".." -->
 
 <!--#include virtual="$ROOT/inc/gbPageStartHardcoded.html" -->
 
 <h1>GenArk: UCSC Genome Archive</h1>
 
 '
 }
 
 #############################################################################
@@ -209,27 +207,27 @@
 }
 
 printf "</tbody></table>\n";
 
 my $totalAsmHubs = `grep -v "^#" /mirrordata/hubs/UCSC_GI.assemblyHubList.txt | wc -l`;
 chomp $totalAsmHubs;
 printf "<p>\n";
 printf "Please note: text file <a href='UCSC_GI.assemblyHubList.txt' target=_blank>listing</a> of %d genome assembly hubs\n", $totalAsmHubs;
 printf "</p>\n";
 
 printf "<p>\n";
 printf "Please note, the <em>invertebrate</em> category contains more than just <em>invertebrate</em> animals.  Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the <em>invertebrate</em> grouping.\n";
 printf "</p>\n";
 
 printf "<p>\n";
-printf "Please use the <a href='https://genome.ucsc.edu/assemblyRequest.html?all' target=_blank>Assembly Request</a> page to find and request GenBank assemblies that have not yet been included in the collections here.\n";
+printf "Please use the <a href='https://genome.ucsc.edu/assemblySearch.html' target=_blank>Assembly Search</a> page to find and request GenBank assemblies that have not yet been included in the collections here.\n";
 printf "</p>\n";
 
 printf "<p>\n";
 printf "To reference these resources in publications, please credit:<br><br>\n";
 printf "Clawson, H., Lee, B.T., Raney, B.J. et al.<br>\n";
 printf "<b>GenArk: towards a million UCSC genome browsers</b>.<br><em>Genome Biol</em> 24, 217 (2023).\n";
 printf "<a href='https://doi.org/10.1186/s13059-023-03057-x' target=_blank>\n";
 printf "https://doi.org/10.1186/s13059-023-03057-x</a>\n";
 printf "</p>\n";
 
 endHtml;