c85c734dd97a76942a9f73af2b37d4ad526203c2 hiram Wed Apr 2 16:56:00 2025 -0700 VGP update refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 3b0e2454f8f..734cf0a3e19 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -118,30 +118,31 @@ GCA_002204515.1_AaegL5.0 invertebrate GCA_002288905.2_ASM228890v2 mammals GCA_002288925.2_ASM228892v2 mammals GCA_002754865.1_ASM275486v1 primates GCA_002775015.1_Cand_auris_B11221_V1 fungi GCA_002776525.1_ASM277652v1 primates GCA_002880755.3_Clint_PTRv2 primates GCA_002880775.3_Susie_PABv2 primates GCA_002940915.2_ASM294091v2 mammals GCA_002966995.1_ASM296699v1 mammals GCA_003031525.1_Neophocaena_asiaeorientalis_V1 mammals GCA_003327715.1_PumCon1.0 mammals GCA_003640425.2_ASM364042v2 invertebrate GCA_003957555.2_bCalAnn1_v1.p birds GCA_003957565.2_bTaeGut1_v1.p birds +GCA_003957565.4_bTaeGut1.4.pri birds GCA_003990815.1_ASM399081v1 invertebrate GCA_004023825.1_VulLag_v1_BIUU mammals GCA_004023905.1_SurSur_v1_BIUU mammals GCA_004024565.1_ZalCal_v1_BIUU mammals GCA_004024665.1_LemCat_v1_BIUU primates GCA_004024745.1_CatWag_v1_BIUU mammals GCA_004024865.1_RouAeg_v1_BIUU mammals GCA_004024905.1_TapInd_v1_BIUU mammals GCA_004025005.1_TadBra_v1_BIUU mammals GCA_004025105.1_TamTet_v1_BIUU mammals GCA_004026685.1_MonMon_M_v1_BIUU mammals GCA_004026725.1_OnyTor_v1_BIUU mammals GCA_004026785.1_MerUng_v1_BIUU mammals GCA_004026985.1_MyoMyo_v1_BIUU mammals GCA_004027225.2_bStrHab1.2.pri birds @@ -272,30 +273,31 @@ GCA_030144855.1_sHypSab1.hap1 vertebrate GCA_030435805.1_mMusLut2.pri mammals GCA_030684315.1_sSteTig4.hap1 vertebrate GCA_030867065.1_rAllMis1 vertebrate GCA_030867095.1_rAllMis1 vertebrate GCA_030936135.1_bGavSte3.hap2 birds GCA_031021105.1_rEryReg1.hap1 vertebrate GCA_035083965.1_klBraLanc5.hap2 invertebrate GCA_036373705.1_fAmiCal2.hap1 fish GCA_036850765.1_mSacBil1_pri_phased_curated mammals GCA_036850995.1_mSacLep1_pri_phased_curated mammals GCA_036971445.1_sNarBan1.hap1 vertebrate GCA_036971685.1_bPatFas1.hap2 birds GCA_038363095.1_mArtLit.hap1 mammals GCA_039877785.1_fChaTrf1.hap1 fish +GCA_040894005.1_aEngPut4.maternal vertebrate GCA_040894355.1_rMyuGeo1.pri.20230808 vertebrate GCA_042242105.1_fPemKlu1.hap1 fish GCA_043159975.1_mMacNem.hap1 primates GCA_044704955.1_sPriJap1.hap1 vertebrate GCA_047511675.1_mMarFla1.hap1 mammals GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds @@ -321,30 +323,32 @@ GCA_905475465.1_ilPieNapi1.1 invertebrate GCA_910591565.1_ilCydSple1.1 invertebrate GCA_910596095.1_fThuMac1.1 fish GCA_947179515.1_mApoSyl1.1 mammals GCA_947347685.1_fPlePla1.1 fish GCA_947461875.1_bHalAlb1.1 birds GCA_949774975.1_mLagAlb1.1 mammals GCA_949987515.1_mDelDel1.1 mammals GCA_949987535.1_mBalAcu1.1 mammals GCA_950005125.1_mChiNiv1.1 mammals GCA_950295315.1_mEriEur2.1 mammals GCA_958295425.1_fSolSol10.1 fish GCA_963082965.1_fCarCar2.1 fish GCA_963259705.1_mMyoDau2.1 mammals GCA_963514075.1_fConCon1.1 fish +GCA_964195595.1_bCalBor7.hap1.1 birds +GCA_964196065.1_bCalBor7.hap2.1 birds GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002435.1_GL2 invertebrate GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002855.3_ASM285v2 fungi GCF_000002945.1_ASM294v2 fungi GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates