f9f813c4330857fed2ed6008e6d6e9eb54d2474a galt Fri Mar 28 04:51:53 2025 -0700 fixing slNameSort in list.c for hubApi, refreshed expected output lists. fixes #26947 diff --git src/hg/inc/trackHub.h src/hg/inc/trackHub.h index 73775ac0c43..a8f7e5f135e 100644 --- src/hg/inc/trackHub.h +++ src/hg/inc/trackHub.h @@ -10,30 +10,31 @@ * are in a subset of the usual trackDb format. * How you use the routines here most commonly is as so: * struct trackHub *hub = trackHubOpen(hubRaUrl); * struct trackHubGenome *hubGenome = trackHubFindGenome(hub, "hg19"); * struct trackDb *tdbList = trackHubTracksForGenome(hub, hubGenome); * // do something with tdbList * trackHubClose(&hub); * Note that the tdbList returned does not have the parent/subtrack pointers set. * It is just a simple list of tracks, not a tree. */ #ifndef TRACKHUB_H #define TRACKHUB_H #include "dystring.h" +#include "hgFind.h" #define MAX_HUB_TRACKDB_FILE_SIZE 256*1024*1024 #define MAX_HUB_GROUP_FILE_SIZE 16*1024*1024 #define MAX_HUB_GENOME_FILE_SIZE 64*1024*1024 struct trackHub /* A track hub. */ { struct trackHub *next; struct hubConnectStatus *hubStatus; /* Pointer to our hubConnectStatus structure, if any. */ char *url; /* URL of hub.ra file. */ struct trackHubGenome *genomeList; /* List of associated genomes. */ struct hash *genomeHash; /* Hash of genomeList keyed by genome name. */ @@ -229,17 +230,20 @@ struct dbDb *trackHubGetPcrServers(); /* Look through attached trackHubs to see which of them have "isPcr" line in them. */ boolean trackHubGetPcrParams(char *database, char **pHost, char **pPort, char **pGenomeDataDir); /* Get the isPcr params from a trackHub genome. */ struct trackHubGenome *trackHubGetGenomeUndecorated(char *database); /* Get the genome structure for an undecorated genome name. */ char *trackHubBuild(char *db, struct cart *cart, struct dyString *visDy); /* Build a track hub using trackDb and the cart. */ struct grp *readGroupRa(char *groupFileName); /* Read in the ra file that describes the groups in an assembly hub. */ + +struct trackDb *trackHubAddTracksGenome(struct trackHubGenome *hubGenome); +/* Load up stuff from data hub and return list. */ #endif /* TRACKHUB_H */