e0df390fc7750251ab187beaf5523ae529e6a30f
gperez2
  Sat Mar 29 16:13:43 2025 -0700
Fixing SyntaxWarning: invalid escape sequence '\G'  by doubling '\G', No RM

diff --git src/utils/qa/pairLastzWrapper.py src/utils/qa/pairLastzWrapper.py
index a8a16cdb715..e6c8e55d2ae 100755
--- src/utils/qa/pairLastzWrapper.py
+++ src/utils/qa/pairLastzWrapper.py
@@ -89,33 +89,33 @@
         else: clade='other'
     else:
         chromSizes_1="/hive/data/genomes/"+assembly+"/chrom.sizes"
         try:
                 bash('ls '+chromSizes_1)
                 #print(bash('ls '+chromSizes_1))
         except subprocess.CalledProcessError:
                 sys.stdout = sys.__stdout__
                 print('ls: cannot access '+chromSizes_1+': No such file or directory')
                 quit()
         digit_pos= re.search(r"\d", assembly)
         db_edit = assembly[0:digit_pos.start()]
         if db_edit in primates:
             clade='primate'
         else:
-            db = bash("hgsql -e \"select genome from dbDb where name='"+assembly+"'\G\" hgcentraltest | grep  genome | cut -c 9-")
+            db = bash("hgsql -e \"select genome from dbDb where name='"+assembly+"'\\G\" hgcentraltest | grep  genome | cut -c 9-")
             db = str(db)[1:-1]
-            db = bash("hgsql -e \"select clade from genomeClade where genome="+db+"\G\" hgcentraltest | grep  clade | cut -c 8-")
+            db = bash("hgsql -e \"select clade from genomeClade where genome="+db+"\\G\" hgcentraltest | grep  clade | cut -c 8-")
             db = str(db)[2:-2]
             if db in validClades:
                 clade=db
             else: clade='other'
     return clade
 
 def getAssembly(assembly):
     """Input assembly and return native assembly or GC assembly name"""
     if assembly[0:3]=='GCA' or assembly[0:3]=='GCF':
         gcAssembly=goto(assembly)
         return gcAssembly
     else: 
         return assembly
 
 def scoringScheme(assembly):