File Changes for lrnassar

v480_preview to v480_preview2 (2025-03-24 to 2025-03-31) v480

• src/hg/htdocs/contacts.html
  • lines changed 5, context: html, text, full: html, text
    ed81f283e769571d3fb71e43f04ac5b8abc2abad Fri Mar 28 16:41:28 2025 -0700
    Removing the kent email to push traffic to the more informative kent informatics site. No RM.
• src/hg/makeDb/trackDb/human/hg38/mane.ra
  • lines changed 1, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/patchTracks.new.ra
  • lines changed 47, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/patchTracks.ra
  • lines changed 35, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/patchesPsl.html
  • lines changed 57, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 39, context: html, text, full: html, text
    c7aab3a42e921c2d7019321969409bf0353abe3e Fri Mar 28 16:44:45 2025 -0700
    Making MANE a default hg38 track due to popular use, and nesting the two patch sequence tracks into one composite so we can use the hideEmptySubtracks setting. The tracks are rarely used and this allows us to open up virtual real estate while still displaying them in important regions where they are vauable. Refs #35326
• src/utils/qa/assemblyStatsCron.py
  • lines changed 4, context: html, text, full: html, text
    dd0dcde4d9c1dd587b2988ec90e960c4685c8c92 Tue Mar 25 20:24:46 2025 -0700
    Added a column to report what % of the total database usage each one of them is. No RM.
• src/utils/qa/hgTracksTiming.py
  • lines changed 25, context: html, text, full: html, text
    8c8dd4c005adb96dd72d52450592056655780ee7 Mon Mar 24 16:52:08 2025 -0700
    Fixing one big problem: I was not going through the 'all history' loop at all due to incorrect variables. And the second change is an improvement to the 20h and all time logic, now it takes the average of the values in that range instead of one discreet data point, refs #32284