Commits for hiram

v481_preview2 to v481_base (2025-04-21 to 2025-04-28) v481

060deb4df162b799f73c1df831996af516a23505 Tue Apr 22 10:29:58 2025 -0700

• adding one for VGP update refs #34370
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 2, context: html, text, full: html, text

b86ea0ed5a0cc938032d96a84356dcab7c37aa61 Tue Apr 22 10:41:08 2025 -0700

• adding one on the secondary list refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 1, context: html, text, full: html, text

70e5b4c72c9a7c1177fea5ea1a8a7ca33486eb3f Tue Apr 22 12:08:14 2025 -0700

• adding one on the secondary list refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 2, context: html, text, full: html, text

d8f2fd7fb27037ca7c15b90af4bad94a93d00069 Tue Apr 22 14:40:04 2025 -0700

• eliminate obsolete entries refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 2, context: html, text, full: html, text

b980c29c9c0b7b6ea51a398bc0c5e780b37cae79 Thu Apr 24 14:50:19 2025 -0700

• refseq update refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 5, context: html, text, full: html, text

c0bca292cfa2bb068ba4989d26af72070eb1a7e1 Sun Apr 27 22:00:38 2025 -0700

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 1, context: html, text, full: html, text

0bc9658008db86cf023e7894561f8ca86ca1cbad Mon Apr 28 10:38:04 2025 -0700

• update to freeze1 status refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 1, context: html, text, full: html, text

5fcbbf99999c63d0c9cee57aa2010a7ec33eda75 Mon Apr 28 10:39:05 2025 -0700

• update to VGP freeze1 status refs #34370
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 5, context: html, text, full: html, text

8c3d9a3c81b2c1d472df3e4a9f90b9f1fa395eea Mon Apr 28 10:39:32 2025 -0700

• update to VGP freeze1 status refs #34370
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text

da0c05d0f33bf639264fa24aef63e25e6bab8216 Mon Apr 28 10:43:11 2025 -0700

• update to freeze1 status refs #34370
  • src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 1, context: html, text, full: html, text