dc5d2fedb09bf9a1ea4ea9d9348f5cbfe7a21a82 jeltje.van.baren Wed Apr 23 11:08:39 2025 -0700 fix typos in recount3.html diff --git src/hg/makeDb/trackDb/recount3.html src/hg/makeDb/trackDb/recount3.html index 1dfccbf8870..481ad806789 100644 --- src/hg/makeDb/trackDb/recount3.html +++ src/hg/makeDb/trackDb/recount3.html @@ -37,40 +37,40 @@

Data Access

The raw data can be explored interactively with the Table Browser or the Data Integrator. For automated analysis, the data may be queried from our REST API.
Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.

The original junction files can be found at
- -https://snaptron.cs.jhu.edu/data/gtexv2/junctions.tgz
- -https://snaptron.cs.jhu.edu/data/tcgav2/junctions.tgz
- -https://snaptron.cs.jhu.edu/data/srav3h/junctions.tgz
- -https://snaptron.cs.jhu.edu/data/ccle/junctions.tgz
- -https://snaptron.cs.jhu.edu/data/srav1m/junctions.tgz (mouse)
+ +https://snaptron.cs.jhu.edu/data/gtexv2/junctions.bgz
+ +https://snaptron.cs.jhu.edu/data/tcgav2/junctions.bgz
+ +https://snaptron.cs.jhu.edu/data/srav3h/junctions.bgz
+ +https://snaptron.cs.jhu.edu/data/ccle/junctions.bgz
+ +https://snaptron.cs.jhu.edu/data/srav1m/junctions.bgz (mouse)

Methods

Junction files were converted to bed format. For grayscaling total read count was log10 transformed and multiplied by 10 to get a score between 0 and 225, which can be found in the bed score field.

References

Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT et al.