dc5d2fedb09bf9a1ea4ea9d9348f5cbfe7a21a82 jeltje.van.baren Wed Apr 23 11:08:39 2025 -0700 fix typos in recount3.html diff --git src/hg/makeDb/trackDb/recount3.html src/hg/makeDb/trackDb/recount3.html index 1dfccbf8870..481ad806789 100644 --- src/hg/makeDb/trackDb/recount3.html +++ src/hg/makeDb/trackDb/recount3.html @@ -37,40 +37,40 @@ </p> <h2>Data Access</h2> The raw data can be explored interactively with the <a href="https://genome.ucsc.edu/cgi-bin/hgTables">Table Browser</a> or the <a href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a>. For automated analysis, the data may be queried from our <a href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>.<br> Please refer to our <a href="https://groups.google.com/a/soe.ucsc.edu/forum/#!forum/genome">mailing list archives</a> for questions, or our <a href="https://genome.ucsc.edu/FAQ/FAQdownloads.html#downloads36">Data Access FAQ</a> for more information. <p> The original junction files can be found at <br> -<a href="https://snaptron.cs.jhu.edu/data/gtexv2/junctions.tgz" target="_blank"> -https://snaptron.cs.jhu.edu/data/gtexv2/junctions.tgz</a><br> -<a href="https://snaptron.cs.jhu.edu/data/tcgav2/junctions.tgz" target="_blank"> -https://snaptron.cs.jhu.edu/data/tcgav2/junctions.tgz</a><br> -<a href="https://snaptron.cs.jhu.edu/data/srav3h/junctions.tgz" target="_blank"> -https://snaptron.cs.jhu.edu/data/srav3h/junctions.tgz</a><br> -<a href="https://snaptron.cs.jhu.edu/data/ccle/junctions.tgz" target="_blank"> -https://snaptron.cs.jhu.edu/data/ccle/junctions.tgz</a><br> -<a href="https://snaptron.cs.jhu.edu/data/srav1m/junctions.tgz" target="_blank"> -https://snaptron.cs.jhu.edu/data/srav1m/junctions.tgz (mouse)</a><br> +<a href="https://snaptron.cs.jhu.edu/data/gtexv2/junctions.bgz" target="_blank"> +https://snaptron.cs.jhu.edu/data/gtexv2/junctions.bgz</a><br> +<a href="https://snaptron.cs.jhu.edu/data/tcgav2/junctions.bgz" target="_blank"> +https://snaptron.cs.jhu.edu/data/tcgav2/junctions.bgz</a><br> +<a href="https://snaptron.cs.jhu.edu/data/srav3h/junctions.bgz" target="_blank"> +https://snaptron.cs.jhu.edu/data/srav3h/junctions.bgz</a><br> +<a href="https://snaptron.cs.jhu.edu/data/ccle/junctions.bgz" target="_blank"> +https://snaptron.cs.jhu.edu/data/ccle/junctions.bgz</a><br> +<a href="https://snaptron.cs.jhu.edu/data/srav1m/junctions.bgz" target="_blank"> +https://snaptron.cs.jhu.edu/data/srav1m/junctions.bgz (mouse)</a><br> </p> <h2>Methods</h2> <p> Junction files were converted to bed format. For grayscaling total read count was log10 transformed and multiplied by 10 to get a score between 0 and 225, which can be found in the bed score field. </p> <h2>References</h2> <p> Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT <em>et al</em>. <a href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02533-6" target="_blank">