88a4d68261b55e8c277557b13c60740a95ace103 braney Mon Apr 14 15:03:38 2025 -0700 support knownGene track with quickLift diff --git src/hg/hgGene/hgGene.c src/hg/hgGene/hgGene.c index 8da0f36c212..39cc991868f 100644 --- src/hg/hgGene/hgGene.c +++ src/hg/hgGene/hgGene.c @@ -761,31 +761,37 @@ if ((tdb == NULL) && sameString(tableName, "knownGene") && differentString(database, knownDb)) { // if no table or knownGene has been given to us, and knownGene doesn't work, try the default gene track. tableName = hdbGetMasterGeneTrack(knownDb); tdb = hTrackDbForTrack(database, tableName); } if (tdb == NULL) hUserAbort("Error: cannot open gene track %s.", tableName); globalTdb = tdb; char *externalDb = trackDbSetting(tdb, "externalDb"); if (externalDb != NULL) conn = hAllocConn(externalDb); else + { + char *liftDb = trackDbSetting(tdb, "quickLiftDb"); + if (liftDb) + database = liftDb; conn = hAllocConn(database); + } + curGeneId = findGeneId(conn, geneName); getGenePosition(conn); curGenePred = getCurGenePred(conn); curGeneName = getGeneName(curGeneId, conn); spConn = hAllocConn(UNIPROT_DB_NAME); swissProtAcc = getSwissProtAcc(conn, spConn, curGeneId); if (isRgdGene(conn)) swissProtAcc=getRgdGeneUniProtAcc(curGeneId, conn); /* Check command variables, and do the ones that * don't want to put up the hot link bar etc. */ if (cartVarExists(cart, hggDoGetMrnaSeq)) doGetMrnaSeq(conn, curGeneId, curGeneName); else if (cartVarExists(cart, hggDoWikiTrack)) doWikiTrack(conn); else if (cartVarExists(cart, hggDoGetProteinSeq))