3ef4f1ee9a45852fd9bfc625bc01cea6c9981367 hiram Wed Apr 16 13:38:00 2025 -0700 VGP update refs #34370 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 8e949978a71..3f9c6691f57 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -1,22 +1,23 @@ 8296 GCA_002915635.3_AmbMex60DD amphibians 38626 GCA_003287225.2_phaCin_HiC mammals 30522 GCA_003369685.2_UOA_Angus_1 mammals 59729 GCA_003957525.1_bTaeGut1_v1.h birds 59729 GCA_003957525.2_bTaeGut1.4.alt birds 9244 GCA_003957555.2_bCalAnn1_v1.p birds 59729 GCA_003957565.2_bTaeGut1_v1.p birds +59729 GCA_003957565.4_bTaeGut1.4.pri birds 9244 GCA_003957575.1_bCalAnn1_v1.h birds 2489341 GCA_004011185.1_bStrHab1_v1.h birds 2489341 GCA_004027225.2_bStrHab1.2.pri birds 9258 GCA_004115175.2_mOrnAna1.alt.v3 mammals 9258 GCA_004115215.3_mOrnAna1.pri.v3 mammals 89673 GCA_004115245.1_mPhyDis1_v1.h mammals 89673 GCA_004115245.2_mPhyDis1.alti.v3 mammals 59479 GCA_004115265.2_mRhiFer1_v1.p mammals 59479 GCA_004115295.1_mRhiFer1_v1.h mammals 40151 GCA_005190385.3_NGI_Narwhal_2 mammals 63155 GCA_007364235.1_fArcCen1_v1.h fish 63155 GCA_007364275.2_fArcCen1 fish 1825980 GCA_007399395.1_rGopEvg1_v1.alt reptiles 61383 GCA_007474575.1_mLynCan4_v1.alt mammals 61383 GCA_007474575.2_mLynCan4.alt.v2 mammals @@ -74,46 +75,48 @@ 296741 GCA_009829205.1_bChiLan1.alt birds 59729 GCA_009859025.1_bTaeGut2.p.v1.alt birds 59729 GCA_009859065.2_bTaeGut2.pri.v2 birds 9771 GCA_009873245.2_mBalMus1.v2 mammals 386614 GCA_010909745.1_sAmbRad1.alt sharks 386614 GCA_010909765.1_sAmbRad1.pri sharks 7757 GCA_010993595.1_kPetMar1.alt otherChordates 8010 GCA_011004835.1_fEsoLuc1.alt fish 8010 GCA_011004845.1_fEsoLuc1.pri fish 100784 GCA_011004865.1_bBalReg1.alt birds 100784 GCA_011004875.1_bBalReg1.pri birds 9483 GCA_011078405.1_mCalJac1.mat primates 9483 GCA_011100535.1_mCalJac1.pat primates 9483 GCA_011100535.2_mCalJac1.2.pat primates 9483 GCA_011100555.1_mCalJac1.pat.X primates +9483 GCA_011100555.2_mCalJa1.2.pat.X mammals 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals 61156 GCA_011762505.2_mArvNil1.pat.X mammals 61156 GCA_011762505.3_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds 882753 GCA_013347815.1_fAntMac1.alt fish 8005 GCA_013347915.1_fEleEle1.alt fish 882753 GCA_013358685.1_fAntMac1.pri fish +8005 GCA_013358815.1_fEleEle1.pri fish 118141 GCA_013368575.1_fMegCyp1.alt fish 48427 GCA_013368595.1_bNycGra1.alt birds 48427 GCA_013368605.1_bNycGra1.pri birds 59479 GCA_014108255.1_mRhiFer1.p mammals 2767082 GCA_014706295.1_ASM1470629v1 birds 129108 GCA_014839645.1_fXenCan1.alt fish 195821 GCA_014839685.1_fAnaAna1.pri fish 195821 GCA_014839705.1_fAnaAna1.alt fish 73324 GCA_014839755.1_bSylBor1.pri birds 73324 GCA_014839765.1_bSylBor1.alt birds 118200 GCA_014839825.1_bDryPub1.alt birds 118200 GCA_014839835.1_bDryPub1.pri birds 129108 GCA_014839995.1_fXenCan1.pri fish 42514 GCA_015220065.1_fPygNat1.alt fish 72105 GCA_015220095.1_fSebUmb1.alt fish @@ -160,53 +163,56 @@ 8895 GCA_020740795.1_bApuApu2.pri.cur birds 34787 GCA_020745675.1_fTauAds1.alt.cur fish 34787 GCA_020745685.1_fTauAds1.pri.cur fish 243314 GCA_020745695.1_bHemCom1.alt.cur birds 243314 GCA_020745705.1_bHemCom1.pri.cur birds 170820 GCA_020745735.1_sHemOce1.pat.X.cur. sharks 170820 GCA_020745765.1_sHemOce1.mat.decon sharks 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 1118847 GCA_020745805.1_bTheCae1.alt.cur birds 297711 GCA_020746095.1_bTroSur1.alt.cur birds 297711 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8319 GCA_026652325.1_ASM2665232v1 amphibians @@ -336,44 +342,46 @@ 3053191 GCA_030684295.1_sSteTig4.hap2 sharks 9823 GCA_030704935.1_ASM3070493v1 mammals 1192867 GCA_030820635.1_KIZ_Lrid_1.0 birds 9438 GCA_030848825.1_DD_mTadBra1_pri mammals 8496 GCA_030867065.1_rAllMis1 reptiles 283338 GCA_030867085.1_rLiaOli1.hap2 reptiles 283338 GCA_030867105.1_rLiaOli1.hap1 reptiles 30419 GCA_030867145.1_bOpiHoa1.hap1 birds 30419 GCA_030867165.1_bOpiHoa1.hap2 birds 37040 GCA_030936125.1_bGavSte3.hap1 birds 37040 GCA_030936135.1_bGavSte3.hap2 birds 121349 GCA_031001685.1_rEryReg1.hap3 reptiles 1552295 GCA_031001765.1_BBF_mMolAlv_v1 mammals 121349 GCA_031021085.1_rEryReg1.hap2 reptiles 121349 GCA_031021105.1_rEryReg1.hap1 reptiles +315492 GCA_031216445.1_YSFRI_Lmacu_1.1 fish 37578 GCA_031468805.1_bMorBas2.hap1 birds 37578 GCA_031468815.1_bMorBas2.hap2 birds 175524 GCA_031876335.1_mHipLar1.pri mammals 111821 GCA_031877785.1_bStrAlu1.hap2 birds 111821 GCA_031877795.1_bStrAlu1.hap1 birds 9802 GCA_031878655.1_mTapInd1.hap1 mammals 10013 GCA_031878665.1_mThoBot2.hap2 mammals 10013 GCA_031878675.1_mThoBot2.hap1 mammals 9802 GCA_031878705.1_mTapInd1.hap2 mammals 161624 GCA_031885435.1_bPasSan2.pri birds 238119 GCA_031893025.1_aLepFus1.hap1 amphibians 238119 GCA_031893055.1_aLepFus1.hap2 amphibians 142480 GCA_032164245.1_rSteOdo2_p1.0 reptiles 111125 GCA_032444005.1_aRanImi1.pri amphibians +8932 GCA_032719375.1_Trm_1.0 birds 3026461 GCA_033296515.1_rMacSuw1.hap1 reptiles 3026461 GCA_033349115.1_rMacSuw1.hap2 reptiles 44489 GCA_033958435.1_ASM3395843v1 reptiles 188344 GCA_034619455.1_bLepDis1.hap1 birds 188344 GCA_034619465.1_bLepDis1.hap2 birds 71010 GCA_035046495.1_rTilSci1.hap1 reptiles 71010 GCA_035046505.1_rTilSci1.hap2 reptiles 179887 GCA_035047305.1_BraPum1.0 reptiles 179890 GCA_035047345.1_BraVen1.1 reptiles 7740 GCA_035083965.1_klBraLanc5.hap2 invertebrate 7873 GCA_035084065.1_sHydCol1.hap1 sharks 212740 GCA_035084135.1_sHepPer1.hap2 sharks 212740 GCA_035084215.1_sHepPer1.hap1 sharks 7873 GCA_035084275.1_sHydCol1.hap2 sharks 51853 GCA_035125265.1_rCanAsp1.hap1 reptiles @@ -453,44 +461,51 @@ 2994998 GCA_039656995.1_mGloMut1.hap2 mammals 151761 GCA_039720425.1_bAmaOch1.hap2 birds 151761 GCA_039720435.1_bAmaOch1.hap1 birds 109706 GCA_039877575.1_fChaTrf1.hap2 fish 109706 GCA_039877785.1_fChaTrf1.hap1 fish 46218 GCA_039878515.1_bCotChi1.hap1 birds 46218 GCA_039878825.1_bCotChi1.hap2 birds 2997257 GCA_039880925.1_mMolNig1.hap2 mammals 2997257 GCA_039880945.1_mMolNig1.hap1 mammals 48277 GCA_039906465.1_bAegAlb1.hap2 birds 82174 GCA_039906515.1_mPseCra1.hap1 mammals 82174 GCA_039906525.1_mPseCra1.hap2 mammals 48277 GCA_039906565.1_bAegAlb1.hap1 birds 8439 GCA_040206675.1_aAscTru1.hap2 amphibians 8439 GCA_040206685.1_aAscTru1.hap1 amphibians +9940 GCA_040805955.1_T2T-sheep1.0 mammals 8801 GCA_040807015.1_bStrCam1.hap2 birds 76066 GCA_040894005.1_aEngPut4.maternal amphibians 76066 GCA_040894015.1_aEngPut4.paternal amphibians 1041117 GCA_040894355.1_rMyuGeo1.pri.20230808 reptiles 1041117 GCA_040894355.2_rMyuGeo1.pri reptiles 752182 GCA_040937895.1_aHypRig1.alt amphibians 8296 GCA_040938575.1_UKY_AmexF1_1 amphibians 7888 GCA_040939525.1_ASM4093952v1 fish 3154068 GCA_040954595.1_ASM4095459v1 invertebrate +3154068 GCA_040954595.2_keBalMisa1.hap2 invertebrate 3154068 GCA_040954625.1_ASM4095462v1 invertebrate +3154068 GCA_040954625.2_keBalMisa1.hap1 invertebrate 7918 GCA_040954845.1_fLepOcu1.hap1 fish 9622 GCA_040955645.1_LycPic1.final.hap1 mammals 9622 GCA_040955705.1_LycPic1.final.hap2 mammals +9925 GCA_041735815.1_T2T-goat2.0 mammals +72011 GCA_041753875.1_ASM4175387v1 fish 9773 GCA_041834305.1_ASM4183430v1 mammals +8005 GCA_041902795.1_ASM4190279v1 fish +310571 GCA_041903045.1_ASM4190304v1 fish 3127111 GCA_042242105.1_fPemKlu1.hap1 fish 3352246 GCA_042242115.1_fArrGeo1.hap1 fish 3127111 GCA_042242125.1_fPemKlu1.hap2 fish 3352246 GCA_042242135.1_fArrGeo1.hap2 fish 9545 GCA_043159975.1_mMacNem.hap1 mammals 9545 GCA_043161795.1_mMacNem.hap2 mammals 394691 GCA_043250625.1_fSebFas1.pri fish 320637 GCA_043290065.1_mRhyPet1.hap2 mammals 320637 GCA_043290085.1_mRhyPet1.hap1 mammals 215367 GCA_043640875.1_fEnoArm2.hap2 fish 188568 GCA_043727835.1_ASM4372783v1 mammals 175524 GCA_043727955.1_ASM4372795v1 mammals 59477 GCA_043728065.1_ASM4372806v1 mammals 430492 GCA_043728145.1_ASM4372814v1 mammals 3030661 GCA_043748575.1_ASM4374857v1 mammals @@ -521,66 +536,95 @@ 260642 GCA_045781095.1_rPanTec1.hap1 reptiles 9999 GCA_045843765.1_mUroPar1.hap2 mammals 9999 GCA_045843805.1_mUroPar1.hap1 mammals 3379902 GCA_046126795.1_rDibSmi1.hap1 reptiles 3379902 GCA_046126825.1_rDibSmi1.hap2 reptiles 28727 GCA_046129645.1_bCyaCrs1.hap2 birds 28727 GCA_046129655.1_bCyaCrs1.hap1 birds 40157 GCA_046129695.1_bLonStr1.mat birds 40157 GCA_046129705.1_bLonStr1.pat birds 1195602 GCA_046255685.1_fAmbSpe1.hap1 fish 1195602 GCA_046255725.1_fAmbSpe1.hap2 fish 9690 GCA_046562875.1_mPanOnc1_haplotype_2 mammals 9690 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