8f6b3fb20ce624a7efbae0d9a84f10ee7e06c885 jeltje.van.baren Wed Apr 16 18:20:07 2025 -0700 Adding encode4 track #31368. Should probably be renamed. diff --git src/hg/lib/encode4.as src/hg/lib/encode4.as new file mode 100644 index 00000000000..482a2debbb6 --- /dev/null +++ src/hg/lib/encode4.as @@ -0,0 +1,24 @@ +table encode4 +"Bed 12+8 file with annotation source and values per sample in a html table." + ( + string chrom; "Chromosome (or contig, scaffold, etc.)" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name of item" + uint score; "Score from 0-1000" + char[1] strand; "+ or -" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "Used as itemRgb as of 2004-11-22" + int blockCount; "Number of blocks" + int[blockCount] blockSizes; "Comma separated list of block sizes" + int[blockCount] chromStarts; "Start positions relative to chromStart" + string source; "Annotation source" + string gene_id; "gene ID" + string gene_name; "gene name" + string transcript_id; "transcript ID" + string transcript_name; "transcript name" + float maxScore; "Highest expression score (counts per million)" + lstring maxScoreHtml; "Highest expression score and sample(s)" + lstring expr_table; "Expression values per sample in TPM" + )