032f71725a8af7b83496a5fef12ca0f1123cbead lrnassar Tue Apr 15 16:39:19 2025 -0700 Squashing stale pennanticons. diff --git src/hg/makeDb/trackDb/human/trackDb.clinGen.ra src/hg/makeDb/trackDb/human/trackDb.clinGen.ra index 284efc4e1ef..1e502ddc6f2 100644 --- src/hg/makeDb/trackDb/human/trackDb.clinGen.ra +++ src/hg/makeDb/trackDb/human/trackDb.clinGen.ra @@ -1,26 +1,25 @@ track clinGenComp shortLabel ClinGen longLabel ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity) visibility hide type bigBed 9 + group phenDis itemRgb on compositeTrack on noParentConfig on html clinGen -pennantIcon New red ../goldenPath/newsarch.html#100924 "October 9, 2024" track clinGenHaplo showCfg on priority 1 parent clinGenComp on shortLabel ClinGen Haploinsufficiency longLabel ClinGen Dosage Sensitivity Map - Haploinsufficiency visibility pack type bigBed 9 + bigDataUrl /gbdb/$D/bbi/clinGen/clinGenHaplo.bb mouseOverField _mouseOver filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely filterLabel.haploScore Dosage Sensitivity Score urls url="$$" PMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID4="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID5="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID6="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" mondoID="https://monarchinitiative.org/disease/$$" @@ -57,16 +56,15 @@ filterValues.SOPversion SOP4,SOP5,SOP6,SOP7 filterLabel.SOPversion ClinGen SOP Version Number filterValues.Classification Definitive,Strong,Moderate,Limited,Animal Model Only,No Reported Evidence,Disputed,Refuted filterLabel.Classification ClinGen Gene-Disease Validity Classification bedNameLabel Associated Disease track clinGenCspec shortLabel ClinGen VCEP Specifications longLabel Clingen CSpec Variant Interpretation VCEP Specifications parent clinGenComp on noScoreFilter on type bigBed 9 + bigDataUrl /gbdb/$D/bbi/clinGen/clinGenCspec.bb visibility pack mouseOver <b>Disease:</b> $disease <br><b>Panel:</b> $panel <br><b>Status:</b> $status - pennantIcon New red ../goldenPath/newsarch.html#100924 "October 9, 2024"