032f71725a8af7b83496a5fef12ca0f1123cbead lrnassar Tue Apr 15 16:39:19 2025 -0700 Squashing stale pennanticons. diff --git src/hg/makeDb/trackDb/human/decipher.alpha.ra src/hg/makeDb/trackDb/human/decipher.alpha.ra index f37588efbef..a7cfa5f003d 100644 --- src/hg/makeDb/trackDb/human/decipher.alpha.ra +++ src/hg/makeDb/trackDb/human/decipher.alpha.ra @@ -1,79 +1,77 @@ track decipherContainer superTrack on shortLabel DECIPHER longLabel DECIPHER cartVersion 7 group phenDis -pennantIcon New red ../goldenPath/newsarch.html#121024 "DDG2P released December 10, 2024" track decipher shortLabel DECIPHER CNVs longLabel DECIPHER CNVs group phenDis visibility pack type bigBed 9 + itemRgb on tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw bigDataUrl /gbdb/$D/decipher/decipherCnv.bb url https://www.deciphergenomics.org/patient/$$ urlLabel Decipher Patient View: filter.size 0 filterByRange.size on filterLimits.size 2:170487333 filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown mergeSpannedItems on searchIndex name mouseOverField _mouseOvera html decipherContainer parent decipherContainer track decipherSnvs shortLabel DECIPHER SNVs longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) group phenDis visibility pack color 0,0,0 type bed 4 tableBrowser off decipherSnvsRaw prevExonText Left edge nextExonText Right edge html decipherContainer parent decipherContainer track decipherDDG2P parent decipherContainer type bigBed 9 + shortLabel DECIPHER DDG2P longLabel DECIPHER: Developmental Disorders panel in the Gene2Phenotype database (DDG2P) bigDataUrl /gbdb/$D/decipher/ddg2pSyndromes.bb group phenDis visibility pack mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer searchIndex name noScoreFilter on filterValues.type loss,gain,del/dup filter.sample_size 0 - pennantIcon New red ../goldenPath/newsarch.html#121024 "Released December 10, 2024" searchTable decipher searchMethod exact searchType bigBed searchTable decipherDDG2P searchMethod exact searchType bigBed searchName decipherId searchTable decipher termRegex [0-9]+ searchType bed searchPriority 50 searchName decipherSnvsId searchTable decipherSnvs termRegex [0-9]+ searchType bed searchPriority 50