032f71725a8af7b83496a5fef12ca0f1123cbead
lrnassar
Tue Apr 15 16:39:19 2025 -0700
Squashing stale pennanticons.
diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra
index e669439edeb..b0f0b0e1657 100644
--- src/hg/makeDb/trackDb/human/decipher.ra
+++ src/hg/makeDb/trackDb/human/decipher.ra
@@ -1,81 +1,79 @@
track decipherContainer
superTrack on
shortLabel DECIPHER
longLabel DECIPHER
cartVersion 7
group phenDis
-pennantIcon New red ../goldenPath/newsarch.html#121024 "DECIPHER Population CNVs released December 10, 2024"
track decipher
priority 1
shortLabel DECIPHER CNVs
longLabel DECIPHER CNVs
group phenDis
visibility pack
type bigBed 9 +
itemRgb on
tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
url https://www.deciphergenomics.org/patient/$$
urlLabel Decipher Patient View:
filter.size 0
filterByRange.size on
filterLimits.size 2:170487333
filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
mergeSpannedItems on
searchIndex name
mouseOverField _mouseOvera
html decipherContainer
parent decipherContainer
track decipherSnvs
priority 2
shortLabel DECIPHER SNVs
longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
group phenDis
visibility pack
color 0,0,0
type bed 4
tableBrowser off decipherSnvsRaw
prevExonText Left edge
nextExonText Right edge
html decipherContainer
parent decipherContainer
track decipherPopulation
priority 3
parent decipherContainer
type bigBed 9 +
shortLabel DECIPHER Population CNVs
longLabel DECIPHER: Population CNVs
bigDataUrl /gbdb/$D/decipher/population_cnv.bb
visibility pack
mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer
searchIndex name
noScoreFilter on
filterValues.type loss,gain,del/dup
filter.sample_size 0
- pennantIcon New red ../goldenPath/newsarch.html#121024 "Released December 10, 2024"
searchTable decipher
searchMethod exact
searchType bigBed
searchTable decipherDDG2P
searchMethod exact
searchType bigBed
searchName decipherId
searchTable decipher
termRegex [0-9]+
searchType bed
searchPriority 50
searchName decipherSnvsId
searchTable decipherSnvs
termRegex [0-9]+
searchType bed
searchPriority 50