Commits for lrnassar

v482_preview2 to v482_base (2025-05-13 to 2025-05-19) v482

7a43f074ea93fdbf0bb7e427e5ed1d8c8bda0821 Tue May 13 13:12:11 2025 -0700

• Adding .ra file that Max had forgotten to commit, refs #35730
  • src/hg/makeDb/trackDb/human/linsight.ra - lines changed 15, context: html, text, full: html, text

a07b191d55246458860278d9006bb45a232c90f3 Tue May 13 16:12:12 2025 -0700

• Staging the hg38 gnomAD pext track, refs #35116
  • src/hg/makeDb/trackDb/human/hg38/gnomad.pext.ra - lines changed 422, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadPext.html - lines changed 139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

9e36613d3d880b010ebfd410b144a3f6995d211e Tue May 13 16:14:39 2025 -0700

• Adding filter capabilities to the clinvar track so we can configure the exon RTS, refs #35725
  • src/hg/makeDb/trackDb/human/clinvar.ra - lines changed 4, context: html, text, full: html, text

5b38b32ab18c6dc6124d36645af4b8b39db9cf77 Tue May 13 16:26:23 2025 -0700

• Hiding by default and adding pennantIcon to the superTrack, refs #35116
  • src/hg/makeDb/trackDb/human/hg38/gnomad.pext.ra - lines changed 1, context: html, text, full: html, text

a2da2b6bdfd0baa55331fbf759c1bffae0b80faf Tue May 13 16:49:14 2025 -0700

• Adding pennantIcon to the superTrack, refs #35116
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 1, context: html, text, full: html, text

42d5350916ba1097d55cc7223c35431536fc0e93 Wed May 14 12:32:38 2025 -0700

• Bytespider was listed twice, also made them alphabetical.
  • src/hg/htdocs/robots.rr.txt - lines changed 3, context: html, text, full: html, text

26754e1af309a8b7c47a44f22a114421d3da003b Wed May 14 16:18:19 2025 -0700

• Improving the new hubConnect redirect page with more information, a link to connect another hub, a disclaimer, and a temporary note that is more visually captivating to make sure users don't wait for the automatic refresh. Refs #29899
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 7, context: html, text, full: html, text

a1d7abb1b3ff06ae5ad1b75d38abeb125e636b02 Wed May 14 17:52:26 2025 -0700

• Updating the desc page to say 50 tissues as opposed to the 53 from hg19. Refs #35116
  • src/hg/makeDb/trackDb/human/hg38/gnomadPext.html - lines changed 1, context: html, text, full: html, text

0983285caec2469eeb7e50ec22fe8042afefa900 Thu May 15 14:00:45 2025 -0700

• Breaking message over multiple lines, feedback from CR. Refs #35746
  • src/hg/js/hgTracks.js - lines changed 5, context: html, text, full: html, text

85cac5cc60514c9fb5a01a50536fc01c161978dd Thu May 15 16:20:50 2025 -0700

• Revert "adding nmd escape track, not in redmine yet" This reverts commit 8448928dc812afc19495fbb51701c51028af6d82. This is because we have a missing nmd.ra file so it breaks the human tdb builds.
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

fb4c73b0577b4057cbaee475ee42c50a263b64fd Thu May 15 16:22:13 2025 -0700

• Changing to a tiny useless summary file so that the track loads quickly on large regions. Previously it could stall browsers for 10-30 seconds on big regions if the track was on. Refs #35534
  • src/hg/makeDb/trackDb/human/hg38/trackDb.241way.ra - lines changed 1, context: html, text, full: html, text

0d81d059d480624c5481e7b54885dbc262a3ac80 Fri May 16 10:29:08 2025 -0700

• Adding new exon relevance RTS, refs #35725
  • src/hg/htdocs/inc/recTrackSets.hg19.tab - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/inc/recTrackSets.hg38.tab - lines changed 2, context: html, text, full: html, text

0497d2117545f7ce8b6caaf452c9b1e10dbc2ed4 Fri May 16 10:45:34 2025 -0700

• News release for the pext track and the exon relevance RTS, refs #35116
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 49, context: html, text, full: html, text
  • src/hg/htdocs/images/exonRelevanceNewsImage.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/images/hg38pextTrackNewsImage.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

76b5d02229ecfef4e7851e2c7d76c821c688b192 Fri May 16 12:14:35 2025 -0700

• Updating meetings page to remove meetings that have passed, and updating with upcoming ones.
  • src/hg/htdocs/indexMeetings.html - lines changed 26, context: html, text, full: html, text