9e36613d3d880b010ebfd410b144a3f6995d211e
lrnassar
  Tue May 13 16:14:39 2025 -0700
Adding filter capabilities to the clinvar track so we can configure the exon RTS, refs #35725

diff --git src/hg/makeDb/trackDb/human/clinvar.ra src/hg/makeDb/trackDb/human/clinvar.ra
index 0bc31355b15..2a6c8323e40 100644
--- src/hg/makeDb/trackDb/human/clinvar.ra
+++ src/hg/makeDb/trackDb/human/clinvar.ra
@@ -70,37 +70,39 @@
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on
         searchIndex _dbVarSsvId
 
         track clinvarSubLolly
         parent clinvar
         shortLabel ClinVar interp
         longLabel ClinVar SNVs submitted interpretations and evidence
         bigDataUrl /gbdb/$D/clinvarSubLolly/clinvarSubLolly.bb
         xrefDataUrl /gbdb/$D/clinvarSubLolly/clinvarSub.bb
         type bigLolly
         group phenDis
         lollySizeField 10
         yAxisNumLabels off
         lollyNoStems on
-        configurable off
         skipFields reviewStatus
         yAxisLabel.0 0 on 150,150,150 OTH
         yAxisLabel.1 1 on 150,150,150 B
         yAxisLabel.2 2 on 150,150,150 LB
         yAxisLabel.3 3 on 150,150,150 VUS
         yAxisLabel.4 4 on 150,150,150 LP
         yAxisLabel.5 5 on 150,150,150 P
         lollyMaxSize 10
         viewLimits 0:5
         mouseOverField _mouseOver
+        filterValues.score 5|Pathogenic,4|Likely Pathogenic,3|Variant of Unknown Significance,2|Likely Benign,1|Benign,0|Others
+        filterType.score multiple
+        filterLabel.score Filter by variant classification
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
 
 searchTable clinvarCnv
 searchType bigBed
 searchDescription ClinVar Copy Number Variants 
 termRegex ^[ne]ssv[0-9]+
 
 searchTable clinvarMain
 searchType bigBed
 searchDescription ClinVar Copy Number Variants
 termRegex ^[ne]ssv[0-9]+