Commits for angie

3070de3ae68503b4913f650584ee86aa606b5592 Mon Apr 28 16:03:21 2025 -0700

Fix corner case (exonic portion of alt in deletion spanning end of transcript) found in #35577
- src/hg/lib/variantProjector.c - lines changed 11, context: html, text, full: html, text

f198c745e42f17eb535990d2617d133ebd1396d6 Tue Apr 29 11:07:40 2025 -0700

Fix vpExpandIndelGaps corner case from #34135 notes 9 & 14 (shifting a gap left past the beginning of the exon in some diabolical imperfect AT repeats in 3' UTR of bosTau6 NM_177504).
- src/hg/lib/variantProjector.c - lines changed 13, context: html, text, full: html, text

bb83f26ce1141e98f2f1db4534fef7dbd4384269 Wed Apr 30 11:15:55 2025 -0700

Added explanation of gray deletion box for delins variants (#33538)
- src/hg/makeDb/trackDb/human/dbSnp155Composite.html - lines changed 4, context: html, text, full: html, text

4a170c36598f984d9957b4a591e09c743b49821f Thu May 1 11:35:31 2025 -0700

In vpTranscriptToProtein, check for NULL protSeq which can happen when the transcript has a CDS but none of the CDS has been aligned to the genome. refs #35577
- src/hg/lib/variantProjector.c - lines changed 3, context: html, text, full: html, text