d90ebafc3574dccc5db20b875c6ebf5cd193e616
gperez2
  Thu May 1 16:36:47 2025 -0700
Adding the VISTA Enhancers 2025 update, refs #35531

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 10897bf16b2..9d3dedd8d5e 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -35835,15 +35835,28 @@
 tawk '{for(ii=6; ii <= 57; ii++) printf("%s\t", $ii); print $ii}' positioned.hg19.txt > tmp2
 paste tmp1 tmp2 | sort -k1,1 -k2,2n > input.bed
 
 # let's do this thing!
 bedToBigBed -extraIndex=name -tab -type=bed9+53 input.bed /cluster/data/hg19/chrom.sizes hgnc.hg19.bb -as=$HOME/kent/src/hg/lib/hgncBig62.as
 
 # put the files into /gbdb
 mkdir -p /gbdb/hg19/hgnc
 rm -rf /gbdb/hg19/hgnc/hgnc.bb
 ln -s `pwd`/hgnc.hg19.bb /gbdb/hg19/hgnc/hgnc.bb 
 
 rm -rf /gbdb/hg19/hgnc/search.ix /gbdb/hg19/hgnc/search.ixx
 ln -s `pwd`/search.hg19.ix /gbdb/hg19/hgnc/search.ix
 ln -s `pwd`/search.hg19.ixx /gbdb/hg19/hgnc/search.ixx
 #############################################################################
+# VISTA Enhancers update 2025 #35531 (2025-04-30 Gerardo)
+
+cd /hive/data/outside/otto/vista
+wget -q  https://gitlab.com/egsb-mfgl/vista-data/-/raw/main/locus_ucsc_hg38.bed  -O vista.hg38.latest.bed
+
+liftOver -tab  -bedPlus=9 vista.hg38.latest.bed /hive/data/gbdb/hg38/liftOver/hg38ToHg19.over.chain.gz vista.hg19.bed unMapped 
+bedToBigBed -tab -sort -type=bed9+1 -as=vista.as vista.hg19.bed  https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes vista.hg19.bb
+
+cd /gbdb/hg19/vistaEnhancers/
+# Making symlink for bigBed file
+ln -s /hive/data/outside/otto/vista/vista.hg19.bb vistaEnhancers.bb
+cd ~/kent/src/hg/makeDb/trackDb/human/hg19
+vi trackDb.ra