d90ebafc3574dccc5db20b875c6ebf5cd193e616
gperez2
  Thu May 1 16:36:47 2025 -0700
Adding the VISTA Enhancers 2025 update, refs #35531

diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt
index 49122284da0..762cb511a45 100644
--- src/hg/makeDb/doc/mm10.txt
+++ src/hg/makeDb/doc/mm10.txt
@@ -19619,16 +19619,31 @@
     int blockCount;    "Number of blocks"
     int[blockCount] blockSizes; "Comma separated list of block sizes"
     int[blockCount] chromStarts; "Start positions relative to chromStart"
     string source;      "Annotation source"
     string gene_id;     "gene ID"	
     string gene_name;   "gene name"	
     string transcript_id;   "transcript ID"	
     string transcript_name;   "transcript name"	
     float maxScore;   "Highest expression score (counts per million)"
     lstring maxScoreHtml;   "Highest expression score and sample(s)"
     lstring expr_table; "Expression values per sample in TPM"
     )
 _EOF_
 
 bedToBigBed -type=bed12+8 -as=encode4.as -tab transcripts.bed /hive/data/genomes/mm10/chrom.sizes encode4.bb
+#############################################################################
+# VISTA Enhancers update 2025 #35531 (2025-04-30 Gerardo)
+
+cd /hive/data/outside/otto/vista
+wget -q  https://gitlab.com/egsb-mfgl/vista-data/-/raw/main/locus_ucsc_mm10.bed  -O vista.mm10.latest.bed
 
+bedToBigBed -tab -sort -type=bed9+1 -as=vista.as vista.mm10.latest.bed \
+  https://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/mm10.chrom.sizes vista.mm10.latest.bb \
+  > /dev/null 2>&1
+
+mv vista.mm10.latest.bb vista.mm10.bb
+cd /gbdb/mm10/vistaEnhancers/
+# Making symlink for bigBed files
+ln -s /hive/data/outside/otto/vista/vista.mm10.bb vistaEnhancers.bb
+cd ~/kent/src/hg/makeDb/trackDb/human/mm10
+vi trackDb.ra