d90ebafc3574dccc5db20b875c6ebf5cd193e616
gperez2
  Thu May 1 16:36:47 2025 -0700
Adding the VISTA Enhancers 2025 update, refs #35531

diff --git src/hg/makeDb/doc/mm39/vistaEnhancers.txt src/hg/makeDb/doc/mm39/vistaEnhancers.txt
index 6ac79fdb7cf..f476a76987b 100644
--- src/hg/makeDb/doc/mm39/vistaEnhancers.txt
+++ src/hg/makeDb/doc/mm39/vistaEnhancers.txt
@@ -1,13 +1,26 @@
 # VISTA Enhancers track refs #16044  (2023-09-20 Gerardo)
 cd /hive/data/outside/
 mkdir vistaEnhancers; cd vistaEnhancers
 mkdir mm39; cd mm39
 liftOver -bedPlus=9 /hive/data/outside/vistaEnhancers/mm9/sortedVistaEnhancers.bed /hive/data/gbdb/mm9/liftOver/mm9ToMm39.over.chain.gz vistaEnhancers.bed unMapped
 bedToBigBed -tab -type=bed9+ -as=/hive/data/outside/vistaEnhancers/mm9/vistaEnhancers.as vistaEnhancers.bed https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.chrom.sizes vistaEnhancers.bb
 cd /gbdb/mm39
 mkdir vistaEnhancers; cd vistaEnhancers
 # Making symlink for big files
 ln -s /hive/data/outside/vistaEnhancers/mm39/vistaEnhancers.bb
 cd ~/kent/src/hg/makeDb/trackDb/mouse/mm39
 vi trackDb.ra
 #############################################################################
+# VISTA Enhancers update 2025 #35531 (2025-04-30 Gerardo)
+
+cd /hive/data/outside/otto/vista
+wget -q  https://gitlab.com/egsb-mfgl/vista-data/-/raw/main/locus_ucsc_mm10.bed  -O vista.mm10.latest.bed
+
+liftOver -tab  -bedPlus=9 vista.mm10.latest.bed /hive/data/gbdb/mm10/liftOver/mm10ToMm39.over.chain.gz vista.mm39.bed unMapped 
+bedToBigBed -tab -sort -type=bed9+1 -as=vista.as vista.mm39.bed  https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.chrom.sizes vista.mm39.bb
+
+cd /gbdb/mm39/vistaEnhancers/
+# Making symlink for bigBed files
+ln -s /hive/data/outside/otto/vista/vista.mm39.bb vistaEnhancers.bb
+cd ~/kent/src/hg/makeDb/trackDb/human/mm39
+vi trackDb.ra