fe96ff900173bd8c6f9b27200b9f70383349869c lrnassar Mon Apr 28 13:26:46 2025 -0700 Staging EVA SNP 7 as QA-ready, refs #35504 diff --git src/hg/lib/evaSnp.as src/hg/lib/evaSnp.as index 0aad462bf43..9f9135a5ac8 100644 --- src/hg/lib/evaSnp.as +++ src/hg/lib/evaSnp.as @@ -2,18 +2,18 @@ "Variant data from EVA VCF files" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chrom" uint chromEnd; "End position in chrom" string name; "Reference SNP identifier" uint score; "Not used" char[1] strand; "Which DNA strand contains the observed alleles" uint thickStart; "Same as chromStart" uint thickEnd; "Same as chromEnd" uint itemRgb; "RGB value for color of item" lstring ref; "The sequence of the reference allele" lstring alt; "The sequences of the alternate alleles" string varClass; "The variant class (VC) from EVA Sequence Ontology term" lstring submitters; "Submitter ID (SID) reporting a variant" - string ucscClass; "Functional class per UCSC Variant Annotation Integrator" + lstring ucscClass; "Functional class per UCSC Variant Annotation Integrator" lstring aaChange; "Change in amino acid" )