fe96ff900173bd8c6f9b27200b9f70383349869c lrnassar Mon Apr 28 13:26:46 2025 -0700 Staging EVA SNP 7 as QA-ready, refs #35504 diff --git src/hg/makeDb/doc/evaSnp7.txt src/hg/makeDb/doc/evaSnp7.txt new file mode 100644 index 00000000000..929e2910b9b --- /dev/null +++ src/hg/makeDb/doc/evaSnp7.txt @@ -0,0 +1,21 @@ +# Track for EVA snp release 7 - https://www.ebi.ac.uk/eva/?RS-Release&releaseVersion=7 +# Tracks built by Lou on 4/28/2025 + +# Track was built for the following 40 assemblies + +# The GCA accession on the eva release by accession list (https://ftp.ebi.ac.uk/pub/databases/eva/rs_releases/release_7/by_assembly/) +# were compared to all native assemblies we have. In total there are 909,269,967 variants + +# All assemblies were passed by the python pipeline described below +# Some assemblies had errors and were skipped, more info in RM #34119 + +# All files were created with the following python3 script: + +~/kent/src/hg/makeDb/scripts/evaSnp/evaSnp7.py + +#Then symlinks were made for all databases + +for dbs in $(cat /hive/data/outside/eva7/assemblyReleaseList.txt); +do +ln -s /hive/data/outside/eva7/$dbs/evaSnp7.bb /gbdb/$dbs/bbi/; +done