"); if (!sameString(output, "psl no header")) pslxWriteHead(stdout, qType, tType); for (psl = pslList; psl != NULL; psl = psl->next) pslTabOut(psl, stdout); if (pslRawOut) exit(0); printf(""); printf(""); } else if (jsonOut) { webStartText(); pslWriteAllJson(pslList, stdout, database, TRUE); exit(0); } else // hyperlink { - printf("

BLAT Search Results

"); - char* posStr = cartOptionalString(cart, "position"); - if (posStr != NULL) - printf("

Go back to %s on the Genome Browser.

\n", browserUrl, posStr); - if (useBigPsl) - { char *trackName = NULL; char *trackDescription = NULL; getCustomName(database, cart, pslList, &trackName, &trackDescription); psl = pslList; printf( "

\n", hgcUrl,cartUsualString(cart, "formMethod", "POST")); printf("\n",psl->tStart); printf("\n",psl->tEnd); printf("\n","buildBigPsl"); printf("\n",pslName,faName,psl->qName); printf("\n",psl->tName); printf("\n",psl->tStart); printf("\n",psl->tEnd); printf("\n", cartSessionVarName(), cartSessionId(cart)); if (pslIsProtein(psl)) printf("\n"); - printf(""); - - printf(""); - printf(""); - printf("

Custom track name: "); - cgiMakeTextVar( "trackName", trackName, 30); - printf("

Custom track description: "); - cgiMakeTextVar( "trackDescription", trackDescription,50); - printf("

\n"); - printInfoIcon("The BLAT results below are temporary and will be replaced by your next BLAT search. " - "However, when saved as a custom track with the button on the left, BLAT results are stored on our " - "servers and can be saved as stable session (View > My Sessions) links that can be shared via email or in manuscripts. " - "\n

We have never cleaned up the data under stable session links so far. " - "To reduce track clutter in your own sessions, you can delete BLAT custom tracks from the main Genome Browser " - "view using the little trash icon next to each custom track.

"); - puts("

"); - } - - printf("

");
-
-    // find maximum query name size for padding calculations and
-    // find maximum target chrom name size for padding calculations
-    int maxQChromNameSize = 0;
-    int maxTChromNameSize = 0;
-    for (psl = pslList; psl != NULL; psl = psl->next)
-	{
-	int qLen = strlen(psl->qName);
-	maxQChromNameSize = max(maxQChromNameSize,qLen);
-	int tLen = strlen(psl->tName);
-	maxTChromNameSize = max(maxTChromNameSize,tLen);
-	}
-    maxQChromNameSize = max(maxQChromNameSize,5);
-    maxTChromNameSize = max(maxTChromNameSize,5);
-
-    printf("   ACTIONS                 QUERY ");
-    
-    spaceOut(stdout, maxQChromNameSize - 5);
-
-    printf("SCORE START   END QSIZE IDENTITY  CHROM ");
-    spaceOut(stdout, maxTChromNameSize - 5);
-
-    printf(" STRAND  START       END   SPAN\n");
+    if (feelingLucky)
+	printf("\n");
 
-    printf("----------------------------------------------------------------------------------------------------------");
-    repeatCharOut(stdout, '-', maxQChromNameSize - 5);
-    repeatCharOut(stdout, '-', maxTChromNameSize - 5);
+    printf("\n", trackName);
 
-    printf("\n");
+    printf("\n", trackDescription);
 
-    for (psl = pslList; psl != NULL; psl = psl->next)
-	{
-        char *browserHelp = "Open a Genome Browser showing this match";
-        char *helpText = "Open a Genome Browser with the BLAT results, but in a new internet browser tab";
-        // XX putting SVG into C code like this is ugly. define somewhere? maybe have globals for these?
-        char *icon = "";
+    printf("\n");
+    puts("");
+    printf("

"); + jsInline("$(document).ready(function() {\n" + "$(\"input[value='Create custom track']\").trigger('click');\n" + "});\n"); - if (customText) - { - printf("browser ", - browserHelp, browserUrl, psl->tName, psl->tStart + 1, psl->tEnd, database, - customText, uiState, unhideTrack); - printf("new tab%s ", - helpText, browserUrl, psl->tName, psl->tStart + 1, psl->tEnd, database, - customText, unhideTrack, icon); - } - else - { - printf("browser ", - browserHelp, browserUrl, psl->tName, psl->tStart + 1, psl->tEnd, database, - pslName, faName, uiState, unhideTrack); - printf("new tab%s ", - helpText, browserUrl, psl->tName, psl->tStart + 1, psl->tEnd, database, - pslName, faName, unhideTrack, icon); - } - printf("", - hgcUrl, psl->tStart, pslName, cgiEncode(faName), psl->qName, psl->tName, - psl->tStart, psl->tEnd, database, uiState); - printf("details "); - - printf("%s",psl->qName); - spaceOut(stdout, maxQChromNameSize - strlen(psl->qName)); - printf(" %5d %5d %5d %5d %5.1f%% ", - pslScore(psl), psl->qStart+1, psl->qEnd, psl->qSize, - 100.0 - pslCalcMilliBad(psl, TRUE) * 0.1); - char *displayChromName = chromAliasGetDisplayChrom(database, cart, psl->tName); - printf("%s",displayChromName); - spaceOut(stdout, maxTChromNameSize - strlen(displayChromName)); - printf(" %-2s %9d %9d %6d", - psl->strand, psl->tStart+1, psl->tEnd, - psl->tEnd - psl->tStart); - - // if you modify this, also modify hgPcr.c:doQuery, which implements a similar feature - char *seq = psl->tName; - if (endsWith(seq, "_fix")) - printf(" What is chrom_fix?"); - else if (endsWith(seq, "_alt")) - printf(" What is chrom_alt?"); - else if (endsWith(seq, "_random")) - printf(" What is chrom_random?"); - else if (startsWith(seq, "chrUn")) - printf(" What is a chrUn sequence?"); - printf("\n"); - } - printf("