45c067e0e154c3b5f52fe8e0cb013e3a6367bfb3 hiram Fri May 9 11:47:18 2025 -0700 avoid sending out alpha,beta,public hub.txt files refs #34917 diff --git src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh index 2046c8d3f8f..2cd6d5d1b44 100755 --- src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh +++ src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh @@ -75,38 +75,38 @@ ssh qateam@$dynaBlat "mkdir -p ${dynaServerDir}" 2>&1 | grep -v "X11 forwarding request" || true printf "# successful mkdir on $dynaBlat\n" 1>&2 printf "rsync --stats -a -L -P ${srcDir}/${accession}.2bit \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2 rsync --stats -a -L -P ${srcDir}/${accession}.2bit "qateam@$dynaBlat:${dynaServerDir}/" \ 2>&1 | grep -v "X11 forwarding request" printf "rsync --stats -a -L -P ${srcDir}/*.gfidx \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2 rsync --stats -a -L -P ${srcDir}/*.gfidx "qateam@$dynaBlat:${dynaServerDir}/" \ 2>&1 | grep -v "X11 forwarding request" fi # the single file hub genome trackDb file: -printf "rsync --delete --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest1}:${destDir}/\"\n" 1>&2 -printf "rsync --delete --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2 -printf "rsync --delete --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest3}:${destDir}/\"\n" 1>&2 -rsync --delete --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest1}:${destDir}/" \ +printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest1}:${destDir}/\"\n" 1>&2 +printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2 +printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest3}:${destDir}/\"\n" 1>&2 +rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest1}:${destDir}/" \ 2>&1 | grep -v "X11 forwarding request" & -rsync --delete --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \ +rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \ 2>&1 | grep -v "X11 forwarding request" -rsync --delete --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest3}:${destDir}/" \ +rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest3}:${destDir}/" \ 2>&1 | grep -v "X11 forwarding request" wait # the new single file hub genome trackDb file: printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest1}:${destDir}/hub.txt\"\n" 1>&2 printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest2}:${destDir}/hub.txt\"\n" 1>&2 printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest3}:${destDir}/hub.txt\"\n" 1>&2 rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest1}:${destDir}/hub.txt" \ 2>&1 | grep -v "X11 forwarding request" & rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest2}:${destDir}/hub.txt" \ 2>&1 | grep -v "X11 forwarding request" rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest3}:${destDir}/hub.txt" \ 2>&1 | grep -v "X11 forwarding request" wait printf "# successful rsync\n"