4c5c7294e5aa262c7a4691c989bc224f99866e97 jbirgmei Mon Apr 7 06:35:50 2025 -0700 New varaico track diff --git src/hg/makeDb/trackDb/human/varsInPubs.html src/hg/makeDb/trackDb/human/varsInPubs.html index bccee32ef74..b26d04c81fd 100644 --- src/hg/makeDb/trackDb/human/varsInPubs.html +++ src/hg/makeDb/trackDb/human/varsInPubs.html @@ -1,28 +1,30 @@ <H2>Description</H2> <p>The tracks that are listed here contain genetic variants and links to scientific publications that mention them.</p> <ul> -<li>The <b>Mastermind</b> track was created by Genomenom, a company that analyzes fulltext +<li>The <b>Mastermind</b> track was created by Genomenon, a company that analyzes fulltext of publications with their own proprietary software with an unknown false positive rate.</li> <li>The <b><a target="_blank" href="https://varchat.engenome.com/">VarChat</a></b> track was created by enGenome and links to its proprietary software, VarChat, with an unknown false positive rate.</li> <li>The <b>AVADA</b> track was created in the Bejerano lab at Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning methods and was evaluated to have a false positive rate of around 50% in their study.</li> <li>The <b>PubTator rsIDs</b> track was created using <a href="https://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator3/">PubTator 3 data</a>.</li> +<li><b>Varaico</b> was created using literature mining in a fashion similar to AVADA. See the +<a href="https://varaico.com/">Varaico website</a> for more details.</li> </ul> </p><p> For additional information please click on the hyperlink of the respective track above. <H2>Display conventions</H2> </p><p> By default, each variant is labeled with the nucleotide change. Hover over the feature to see more information, explained on the track details page of the particular track or when clicking onto the feature. </p> <H2>Credits</H2> <p> For data provenance, access and descriptions, please click the documentation via the link above. </p>