dfe490296adf7fc6025c431b5f08a90706ccb2be max Tue May 13 03:19:05 2025 -0700 linsight track for hg19, refs #35730 diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt index 632146fa65d..9dda5c555b6 100644 --- src/hg/makeDb/doc/hg19.txt +++ src/hg/makeDb/doc/hg19.txt @@ -35843,15 +35843,23 @@ ln -s `pwd`/search.hg19.ixx /gbdb/hg19/hgnc/search.ixx ############################################################################# # VISTA Enhancers update 2025 #35531 (2025-04-30 Gerardo) cd /hive/data/outside/otto/vista wget -q https://gitlab.com/egsb-mfgl/vista-data/-/raw/main/locus_ucsc_hg38.bed -O vista.hg38.latest.bed liftOver -tab -bedPlus=9 vista.hg38.latest.bed /hive/data/gbdb/hg38/liftOver/hg38ToHg19.over.chain.gz vista.hg19.bed unMapped bedToBigBed -tab -sort -type=bed9+1 -as=vista.as vista.hg19.bed https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes vista.hg19.bb cd /gbdb/hg19/vistaEnhancers/ # Making symlink for bigBed file ln -s /hive/data/outside/otto/vista/vista.hg19.bb vistaEnhancers.bb cd ~/kent/src/hg/makeDb/trackDb/human/hg19 vi trackDb.ra + +############################################################################# +# LINSIGHT scores, max, Tue May 13 03:18:39 AM PDT 2025 +# (almost nothing to do here) +cd /hive/data/genomes/hg19/bed/linsight/ +wget http://compgen.cshl.edu/LINSIGHT/LINSIGHT.bw +# +