8a88f3d9cb80250c8449e028052898b824a1599d max Mon May 12 05:23:50 2025 -0700 adding HAQers to unusual cons track, suggested by Katie Pollard, refs #35703 diff --git src/hg/makeDb/doc/hg38/unusualcons.txt src/hg/makeDb/doc/hg38/unusualcons.txt index a2851d4efb4..06058afbc34 100644 --- src/hg/makeDb/doc/hg38/unusualcons.txt +++ src/hg/makeDb/doc/hg38/unusualcons.txt @@ -33,15 +33,19 @@ bedSort supp2.hg38.bed supp2.hg38.bed bedToBigBed supp2.hg38.bed ../../../chrom.sizes hcondels583.bb mkdir /hive/data/genomes/hg38/bed/unusualcons/ultras/ cd /hive/data/genomes/hg38/bed/unusualcons/ultras/ wget http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hg19/hg19.ultraConserved.bb bigBedToBed hg19.ultraConserved.bb hg19.ultraConserved.bed liftOver hg19.ultraConserved.bed /hive/data/genomes/hg19/bed/liftOver/hg19ToHg38.over.chain.gz hg38.ultraConserved.bed unmapped.txt bedToBigBed hg38.ultraConserved.bed ../../../chrom.sizes hg38.ultraConserved.bb mkdir /hive/data/genomes/hg38/bed/unusualcons/zooUces/ cd /hive/data/genomes/hg38/bed/unusualcons/zooUces/ wget https://cgl.gi.ucsc.edu/data/cactus/zoonomia-2021-track-hub/hg38/zooUCEs.bed.gz wget https://cgl.gi.ucsc.edu/data/cactus/zoonomia-2021-track-hub/hg38/RoCCs.bigBed wget https://cgl.gi.ucsc.edu/data/cactus/zoonomia-2021-track-hub/hg38/UNICORNs.bigBed + +cd /hive/data/genomes/hg38/bed/unusualcons/haqers/ +bedSort haqers.bed haqers.bed +bedToBigBed haqers.bed ../../../chrom.sizes haqers.bb