63d2e22e2faf0c23235a743c35b0d52755e455b9 gperez2 Thu Jun 5 15:58:39 2025 -0700 Updating the EVA SNP track description page, adding pennantIcon, and adding beta tag, refs #35504 diff --git src/hg/makeDb/trackDb/evaSnp.alpha.ra src/hg/makeDb/trackDb/evaSnp.alpha.ra index 7d9b246e985..9e4782c7cde 100644 --- src/hg/makeDb/trackDb/evaSnp.alpha.ra +++ src/hg/makeDb/trackDb/evaSnp.alpha.ra @@ -1,22 +1,23 @@ track evaSnpContainer shortLabel EVA SNP longLabel Short Genetic Variants from European Variant Archive group varRep type bigBed 9 + compositeTrack on visibility dense +pennantIcon Updated red ../goldenPath/newsarch.html#060625 "Updated June 6, 2025" track evaSnp shortLabel EVA SNP Release 3 longLabel Short Genetic Variants from European Variant Archive Release 3 type bigBed 9 + parent evaSnpContainer off itemRgb on mouseOver $ref>$alt $ucscClass $aaChange bigDataUrl /gbdb/$D/bbi/evaSnp.bb url https://www.ebi.ac.uk/eva/?variant&accessionID=$$ filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration filterLabel.varClass Variant class from EVA SO term filterLabel.ucscClass Functional effect per UCSC Variant Annotation filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant filterType.ucscClass multipleListOnlyOr