63d2e22e2faf0c23235a743c35b0d52755e455b9
gperez2
  Thu Jun 5 15:58:39 2025 -0700
Updating the EVA SNP track description page, adding pennantIcon, and adding beta tag, refs #35504

diff --git src/hg/makeDb/trackDb/evaSnp.alpha.ra src/hg/makeDb/trackDb/evaSnp.alpha.ra
index 7d9b246e985..9e4782c7cde 100644
--- src/hg/makeDb/trackDb/evaSnp.alpha.ra
+++ src/hg/makeDb/trackDb/evaSnp.alpha.ra
@@ -1,131 +1,132 @@
 track evaSnpContainer
 shortLabel EVA SNP
 longLabel Short Genetic Variants from European Variant Archive
 group varRep
 type bigBed 9 +
 compositeTrack on
 visibility dense
+pennantIcon Updated red ../goldenPath/newsarch.html#060625 "Updated June 6, 2025"
 
 track evaSnp
 shortLabel EVA SNP Release 3
 longLabel Short Genetic Variants from European Variant Archive Release 3
 type bigBed 9 +
 parent evaSnpContainer off
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 
 searchTable evaSnp
 searchType bigBed
 searchMethod exact
 padding 20
 
 track evaSnp4
 shortLabel EVA SNP Release 4
 longLabel Short Genetic Variants from European Variant Archive Release 4
 type bigBed 9 +
 parent evaSnpContainer off
 visibility hide
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp4.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 
 searchTable evaSnp4
 searchType bigBed
 searchMethod exact
 padding 20
 
 track evaSnp5
 shortLabel EVA SNP Release 5
 longLabel Short Genetic Variants from European Variant Archive Release 5
 type bigBed 9 +
 parent evaSnpContainer off
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp5.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 
 searchTable evaSnp5
 searchType bigBed
 searchMethod exact
 padding 20
 
 track evaSnp6
 shortLabel EVA SNP Release 6
 longLabel Short Genetic Variants from European Variant Archive Release 6
 type bigBed 9 +
 parent evaSnpContainer off
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp6.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 html evaSnpContainer
 
 searchTable evaSnp6
 searchType bigBed
 searchMethod exact
 padding 20
 
 track evaSnp7
 shortLabel EVA SNP Release 7
 longLabel Short Genetic Variants from European Variant Archive Release 7
 type bigBed 9 +
 parent evaSnpContainer on
 visibility dense
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp7.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 html evaSnpContainer
 
 searchTable evaSnp7
 searchType bigBed
 searchMethod exact
 padding 20