c116985c1418c05e3d2611a1ccdc8b030b4aeb26 hiram Tue Jun 3 13:46:32 2025 -0700 moving 77 legacy assemblies to legacy group refs #35415 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index c3b40d19a1f..fe5fa0b9734 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -198,33 +198,109 @@ GCA_014356525.1_ASM1435652v1 invertebrate GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015104395.1_ASM1510439v1 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_015227805.3_bHirRus1.pri.v3 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals GCA_017916325.1_LU_Lmar_1.0 invertebrate GCA_017916335.1_LU_Lori_1.0 invertebrate GCA_017976375.1_bCucCan1.pri birds GCA_017976425.1_fToxJac2.pri fish GCA_018139145.1_ASM1813914v1 birds GCA_018296145.1_Otsh_v2.0 fish +GCA_018466835.1_HG02257.alt.pat.f1_v2 primates +GCA_018466845.1_HG02257.pri.mat.f1_v2 primates +GCA_018466855.1_HG02559.alt.pat.f1_v2 primates +GCA_018466985.1_HG02559.pri.mat.f1_v2 primates +GCA_018467005.1_HG02486.alt.pat.f1_v2 primates +GCA_018467015.1_HG02486.pri.mat.f1_v2 primates +GCA_018467155.1_HG01891.pri.mat.f1_v2 primates +GCA_018467165.1_HG01891.alt.pat.f1_v2 primates +GCA_018469405.1_HG01258.pri.mat.f1_v2 primates +GCA_018469415.1_HG03516.alt.pat.f1_v2 primates +GCA_018469425.1_HG03516.pri.mat.f1_v2 primates +GCA_018469665.1_HG01123.pri.mat.f1_v2.1 primates +GCA_018469675.1_HG01258.alt.pat.f1_v2 primates +GCA_018469685.1_HG01361.pri.mat.f1_v2 primates +GCA_018469695.1_HG01123.alt.pat.f1_v2.1 primates +GCA_018469705.1_HG01361.alt.pat.f1_v2 primates +GCA_018469865.1_HG01358.pri.mat.f1_v2.1 primates +GCA_018469875.1_HG02622.pri.mat.f1_v2 primates +GCA_018469925.1_HG02622.alt.pat.f1_v2 primates +GCA_018469935.1_HG02717.pri.mat.f1_v2 primates +GCA_018469945.1_HG02630.alt.pat.f1_v2 primates +GCA_018469955.1_HG02630.pri.mat.f1_v2 primates +GCA_018469965.1_HG01358.alt.pat.f1_v2.1 primates +GCA_018470425.1_HG02717.alt.pat.f1_v2 primates +GCA_018470435.1_HG02572.alt.pat.f1_v2 primates +GCA_018470445.1_HG02572.pri.mat.f1_v2 primates +GCA_018470455.1_HG02886.pri.mat.f1_v2 primates +GCA_018470465.1_HG02886.alt.pat.f1_v2 primates +GCA_018471065.1_HG01175.alt.pat.f1_v2 primates +GCA_018471075.1_HG01106.alt.pat.f1_v2 primates +GCA_018471085.1_HG01175.pri.mat.f1_v2 primates +GCA_018471095.1_HG00741.pri.mat.f1_v2 primates +GCA_018471105.1_HG00741.alt.pat.f1_v2 primates +GCA_018471345.1_HG01106.pri.mat.f1_v2 primates +GCA_018471515.1_HG00438.pri.mat.f1_v2 primates +GCA_018471525.1_HG02148.alt.pat.f1_v2 primates +GCA_018471535.1_HG02148.pri.mat.f1_v2 primates +GCA_018471545.1_HG01952.pri.mat.f1_v2 primates +GCA_018471555.1_HG01952.alt.pat.f1_v2 primates +GCA_018472565.1_HG00673.pri.mat.f1_v2 primates +GCA_018472575.1_HG00621.alt.pat.f1_v2 primates +GCA_018472585.1_HG00673.alt.pat.f1_v2 primates +GCA_018472595.1_HG00438.alt.pat.f1_v2 primates +GCA_018472605.1_HG00621.pri.mat.f1_v2 primates +GCA_018472685.1_HG01071.pri.mat.f1_v2 primates +GCA_018472695.1_HG01928.pri.mat.f1_v2 primates +GCA_018472705.1_HG01928.alt.pat.f1_v2 primates +GCA_018472715.1_HG00735.alt.pat.f1_v2 primates +GCA_018472725.1_HG01071.alt.pat.f1_v2 primates +GCA_018472765.1_HG00735.pri.mat.f1_v2 primates +GCA_018472825.1_HG03579.pri.mat.f1_v2 primates +GCA_018472835.1_HG03579.alt.pat.f1_v2 primates +GCA_018472845.1_HG01978.alt.pat.f1_v2 primates +GCA_018472855.1_HG03453.pri.mat.f1_v2 primates +GCA_018472865.1_HG01978.pri.mat.f1_v2 primates +GCA_018473295.1_HG03540.pri.mat.f1_v2 primates +GCA_018473305.1_HG03453.alt.pat.f1_v2 primates +GCA_018473315.1_HG03540.alt.pat.f1_v2 primates +GCA_018503255.1_NA18906.pri.mat.f1_v2 primates +GCA_018503265.1_NA19240.alt.pat.f1_v2 primates +GCA_018503275.1_NA19240.pri.mat.f1_v2 primates +GCA_018503285.1_NA18906.alt.pat.f1_v2 primates +GCA_018503525.1_HG03486.pri.mat.f1_v2 primates +GCA_018503575.1_HG02818.alt.pat.f1_v2 primates +GCA_018503585.1_HG02818.pri.mat.f1_v2 primates +GCA_018504045.1_HG01243.alt.pat.f1_v2 primates +GCA_018504055.1_HG02080.alt.pat.f1_v2 primates +GCA_018504065.1_HG02723.pri.mat.f1_v2 primates +GCA_018504075.1_HG02723.alt.pat.f1_v2 primates +GCA_018504085.1_HG02080.pri.mat.f1_v2 primates +GCA_018504365.1_HG01109.pri.mat.f1_v2 primates +GCA_018504375.1_HG01243.pri.mat.f1_v2 primates +GCA_018504645.1_HG01109.alt.pat.f1_v2 primates +GCA_018504655.1_NA21309.pri.mat.f1_v2 primates GCA_018691715.1_ASM1869171v1 invertebrate GCA_018852605.1_HG002.alt.pat.f1_v2 primates +GCA_018852605.2_ASM1885260v2 primates GCA_018852615.1_HG002.pri.mat.f1_v2 primates +GCA_018852615.2_Q100_hg002v1.0.1.mat primates GCA_019393635.1_mDroGli1.pri mammals GCA_019925205.1_ASM1992520v1 invertebrate GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds GCA_020745735.1_sHemOce1.pat.X.cur. vertebrate GCA_020800215.1_PR-102_v3_p invertebrate GCA_020826845.1_mDicBic1.mat.cur mammals GCA_021462225.2_DD_fGirMul_XY1 fish GCA_021950905.1_HG002.pat.cur.20211005 primates GCA_021951015.1_HG002.mat.cur.20211005 primates GCA_022059095.1_T.mel.1 invertebrate GCA_022577435.1_fEmbJac1.0.p fish GCA_022682395.1_HLdesRot8B mammals GCA_022682495.1_HLdesRot8A mammals GCA_022682495.2_HLdesRot8A.1 mammals @@ -256,30 +332,31 @@ GCA_028018385.1_mNeoNeb1.pri mammals GCA_028018845.1_bMelGeo1.pri birds GCA_028023285.1_mBalRic1.hap2 mammals GCA_028372415.1_mMacEug1.pri mammals GCA_028372415.2_mMacEug1.pri_v2 mammals GCA_028389875.1_bPtePen1.pri birds GCA_028390025.1_aPseCor3.hap2 vertebrate GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_028538775.1_mMyoYum1.0.hap1 mammals GCA_028564815.1_mEubGla1.hap2 mammals GCA_028858625.1_bColStr4.hap2 birds GCA_028858705.1_bGruAme1.mat birds GCA_028858725.1_bColStr4.hap1 birds GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates +GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt primates GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates GCA_029207755.1_bChaFas1.0.hap1 birds GCA_029215685.1_rPitCat1.0.hap2 vertebrate GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri primates GCA_029281585.3_NHGRI_mGorGor1-v2.1_pri primates GCA_029499605.1_aHylSar1.hap1 vertebrate GCA_029633855.1_fHopMal1.hap1 fish GCA_029633865.1_fLamInc1.hap2 fish GCA_029633875.1_fHopMal1.hap2 fish GCA_030028045.1_mHipAmp2.hap2 mammals GCA_030028105.1_sMobBir1.hap1 vertebrate GCA_030144855.1_sHypSab1.hap1 vertebrate GCA_030435805.1_mMusLut2.pri mammals GCA_030445055.1_mDasNov1.hap1 mammals GCA_030463535.1_fSalBra1.hap2 fish @@ -343,35 +420,39 @@ GCA_910591565.1_ilCydSple1.1 invertebrate GCA_910596095.1_fThuMac1.1 fish GCA_947179515.1_mApoSyl1.1 mammals GCA_947347685.1_fPlePla1.1 fish GCA_947461875.1_bHalAlb1.1 birds GCA_949774975.1_mLagAlb1.1 mammals GCA_949987515.1_mDelDel1.1 mammals GCA_949987535.1_mBalAcu1.1 mammals GCA_950005125.1_mChiNiv1.1 mammals GCA_950295315.1_mEriEur2.1 mammals GCA_958295425.1_fSolSol10.1 fish GCA_963082965.1_fCarCar2.1 fish GCA_963259705.1_mMyoDau2.1 mammals GCA_963455315.2_mGloMel1.2 mammals GCA_963514075.1_fConCon1.1 fish +GCA_964145185.1_mMinSch1.hap2.1 mammals +GCA_964146895.1_mMinSch1.hap1.1 mammals GCA_964195595.1_bCalBor7.hap1.1 birds GCA_964196065.1_bCalBor7.hap2.1 birds GCA_964212025.1_mMyoNat1.hap2.1 mammals GCA_964212035.1_mMyoNat1.hap1.1 mammals GCA_964237555.1_mOryCun1.1 mammals +GCA_964264875.1_mNycLei1.hap1.1 mammals +GCA_964264895.1_mNycLei1.hap2.1 mammals GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002435.1_GL2 invertebrate GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002855.3_ASM285v2 fungi GCF_000002945.1_ASM294v2 fungi GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates @@ -573,19 +654,15 @@ GCF_900747795.1_fErpCal1.1 fish GCF_900880675.1_fSpaAur1.1 fish GCF_900963305.1_fEcheNa1.1 fish GCF_901001135.1_aRhiBiv1.1 vertebrate GCF_901001165.1_fSalTru1.1 fish GCF_901765095.1_aMicUni1.1 vertebrate GCF_902150015.1_genome_assembly_l500 birds GCF_902459505.1_aGeoSer1.1 vertebrate GCF_902713615.1_sScyCan1.1 vertebrate GCF_902827115.1_fPseGeo1.1 fish GCF_903992535.1_mArvAmp1.1 mammals GCF_922984935.1_mMelMel3.1_paternal_haplotype mammals GCF_929443795.1_bAccGen1.1 birds GCF_932274485.1_xgPatVulg1.1 invertebrate GCF_963455315.1_mGloMel1.1 mammals -GCA_964145185.1_mMinSch1.hap2.1 mammals -GCA_964146895.1_mMinSch1.hap1.1 mammals -GCA_964264875.1_mNycLei1.hap1.1 mammals -GCA_964264895.1_mNycLei1.hap2.1 mammals