2373cd564a862f870831fc66bb4687e422848ffa
markd
  Sat Jun 7 14:11:06 2025 -0700
Import of CLS Long Read Data from GENCODE / CRG (aka what I did in Barcelona)

diff --git src/hg/makeDb/outside/clsLongReadRna/clsModelBed.as src/hg/makeDb/outside/clsLongReadRna/clsModelBed.as
new file mode 100644
index 00000000000..5d2b5bc2c41
--- /dev/null
+++ src/hg/makeDb/outside/clsLongReadRna/clsModelBed.as
@@ -0,0 +1,19 @@
+table clsModelBed
+"CLS long-read LyRiC models"
+    (
+    string chrom;      "Chromosome"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Model id"
+    uint   score;      "unused"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Same as chromStart"
+    uint thickEnd;     "Same as chromEnd"
+    uint reserved;     "unised"
+    int blockCount;    "Number of blocks"
+    int[blockCount] blockSizes; "Comma separated list of block sizes"
+    int[blockCount] chromStarts; "Start positions relative to chromStart"
+    int sampleCount;    "Number of samples containing the isoform"
+    string[sampleCount] samples;  "Samples and platforms containing this model"
+    string[sampleCount] sampleIds;  "Sample ids"
+    )