2373cd564a862f870831fc66bb4687e422848ffa markd Sat Jun 7 14:11:06 2025 -0700 Import of CLS Long Read Data from GENCODE / CRG (aka what I did in Barcelona) diff --git src/hg/makeDb/outside/clsLongReadRna/clsModelBed.as src/hg/makeDb/outside/clsLongReadRna/clsModelBed.as new file mode 100644 index 00000000000..5d2b5bc2c41 --- /dev/null +++ src/hg/makeDb/outside/clsLongReadRna/clsModelBed.as @@ -0,0 +1,19 @@ +table clsModelBed +"CLS long-read LyRiC models" + ( + string chrom; "Chromosome" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Model id" + uint score; "unused" + char[1] strand; "+ or -" + uint thickStart; "Same as chromStart" + uint thickEnd; "Same as chromEnd" + uint reserved; "unised" + int blockCount; "Number of blocks" + int[blockCount] blockSizes; "Comma separated list of block sizes" + int[blockCount] chromStarts; "Start positions relative to chromStart" + int sampleCount; "Number of samples containing the isoform" + string[sampleCount] samples; "Samples and platforms containing this model" + string[sampleCount] sampleIds; "Sample ids" + )