2373cd564a862f870831fc66bb4687e422848ffa markd Sat Jun 7 14:11:06 2025 -0700 Import of CLS Long Read Data from GENCODE / CRG (aka what I did in Barcelona) diff --git src/hg/makeDb/outside/clsLongReadRna/gff-attrs-extract.awk src/hg/makeDb/outside/clsLongReadRna/gff-attrs-extract.awk new file mode 100644 index 00000000000..bd343c0cec8 --- /dev/null +++ src/hg/makeDb/outside/clsLongReadRna/gff-attrs-extract.awk @@ -0,0 +1,27 @@ + + +BEGIN{ + print "transcriptId", "samplesMetadata", "artifact" + ID = "" +} + +(transcriptId != "") && ($1 != transcriptId) { + print transcriptId, samplesMetadata, artifact +} + +$2=="ID" { + transcriptId = $3 +} + +$2=="samplesMetadata" { + samplesMetadata = $3 +} + +$2=="artifact" { + artifact = $3 +} + +END { + print transcriptId, samplesMetadata, artifact +} +