Commits for hiram

v483_preview to v483_preview2 (2025-05-26 to 2025-06-02) v483

dbb90af27dc59821641e5e6fd30edb9afe72e955 Tue May 27 08:53:59 2025 -0700

• eliminate the GRCh38 versions refs #29545
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 2, context: html, text, full: html, text

0d7871621c30ea9a041d008cb65759ebc221dc43 Wed May 28 10:07:28 2025 -0700

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text

8ff33a8c8dfc26aa665aa38e011dda59e052cdd3 Wed May 28 14:03:10 2025 -0700

• adding a couple per user requests refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 1, context: html, text, full: html, text

3da03b62ffcd33ec6eb723ab92f31498453ad8d6 Fri May 30 09:53:19 2025 -0700

• adding virus for BRC project and primates for HPRC refs #34337
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 312, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 40, context: html, text, full: html, text
  • src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv - lines changed 282, context: html, text, full: html, text

48d4e3681256e047c5a7ecb7396a7f3309040898 Fri May 30 16:16:49 2025 -0700

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 1, context: html, text, full: html, text

ce21aabaec39207d30b1f8a6b23a8d732a2ea5ef Fri May 30 20:59:14 2025 -0700

• initial version of VGP Lift Over track refs #34370trackDb.ra
  • src/hg/makeDb/trackDb/human/hg38/vgpLiftOver.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/vgpLiftOver.ra - lines changed 654, context: html, text, full: html, text

385a4dcf7c14390e9a607dc0cc9ec4747d797a77 Fri May 30 21:04:39 2025 -0700

• initial version of VGP Lift Over track refs #34370
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

567ce4469370df8d8bfd61370b6ceb53713f0c5f Fri May 30 21:13:22 2025 -0700

• initial version of VGP Lift Over track refs #34370
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

1121c0e9366df52d3b1aceca534e147060e8af1b Fri May 30 21:29:46 2025 -0700

• initial version of VGP Lift Over track refs #34370
  • src/hg/makeDb/trackDb/human/hg38/vgpLiftOver.ra - lines changed 129, context: html, text, full: html, text

92634f0f5c8afcb109341543a5fc2fe978cba657 Sun Jun 1 13:25:03 2025 -0700

• adding updated HPRC assemblies refs #35415
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 51, context: html, text, full: html, text

fb83822aeeef2f87fa0bf7d1daaea1f365e6d7b5 Mon Jun 2 08:57:54 2025 -0700

• hgdownload2 disk is full send no more data to hgdownload2 refs #35415
  • src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh - lines changed 7, context: html, text, full: html, text