359adb77c8cc1ebc8f1d8013b4d138d1311b2775
hiram
Thu Jun 19 11:17:12 2025 -0700
correct email address in the hub.txt files
diff --git src/hg/makeDb/doc/asmHubs/mkGenomes.pl src/hg/makeDb/doc/asmHubs/mkGenomes.pl
index afc9172385c..48bd32e3b01 100755
--- src/hg/makeDb/doc/asmHubs/mkGenomes.pl
+++ src/hg/makeDb/doc/asmHubs/mkGenomes.pl
@@ -137,31 +137,31 @@
my $fileCount = 0;
my @tdbLines;
open (TD, "<$trackDb") or die "can not read trackDb: $trackDb";
while (my $tdbLine =
) {
chomp $tdbLine;
push @tdbLines, $tdbLine;
}
close (TD);
my $assemblyName = $asmId;
$assemblyName =~ s/${accessionId}_//;
foreach my $fh (@fhN) {
printf $fh "hub %s genome assembly\n", $accessionId;
printf $fh "shortLabel %s\n", $orgName;
printf $fh "longLabel %s/%s/%s genome assembly\n", $orgName, $descr, $asmId;
printf $fh "useOneFile on\n";
- printf $fh "email hclawson\@ucsc.edu\n";
+ printf $fh "email genome-www\@soe.ucsc.edu\n";
printf $fh "descriptionUrl html/%s.description.html\n", $asmId;
printf $fh "\n";
printf $fh "genome %s\n", $accessionId;
printf $fh "taxId %s\n", $taxId if (length($taxId) > 1);
printf $fh "groups groups.txt\n";
printf $fh "description %s\n", $orgName;
printf $fh "twoBitPath %s.2bit\n", $accessionId;
printf $fh "twoBitBptUrl %s.2bit.bpt\n", $accessionId;
printf $fh "chromSizes %s.chrom.sizes.txt\n", $accessionId;
if ( -s "${buildDir}/${asmId}.chromAlias.bb" ) {
printf $fh "chromAliasBb %s.chromAlias.bb\n", $accessionId;
} else {
printf $fh "chromAlias %s.chromAlias.txt\n", $accessionId;
}
if ($chromAuthority =~ m/^chromAuthority/) {
@@ -357,31 +357,31 @@
printf "transBlat $blatHost$blatHostDomain %d dynamic $accessionDir/$accessionId\n", $blatPort + $hugeGenome;
printf "isPcr $blatHost$blatHostDomain %d dynamic $accessionDir/$accessionId\n", $blatPort + $hugeGenome;
} else {
printf STDERR "# missing ${destDir}/$accessionId.trans.gfidx\n";
}
}
printf "\n";
# the original multi-file system:
my $localHubTxt = "$buildDir/${asmId}.hub.txt";
open (HT, ">$localHubTxt") or die "can not write to $localHubTxt";
printf HT "hub %s genome assembly\n", $accessionId;
printf HT "shortLabel %s\n", $orgName;
printf HT "longLabel %s/%s/%s genome assembly\n", $orgName, $descr, $asmId;
printf HT "genomesFile genomes.txt\n";
- printf HT "email hclawson\@ucsc.edu\n";
+ printf HT "email genome-www\@soe.ucsc.edu\n";
printf HT "descriptionUrl html/%s.description.html\n", $asmId;
close (HT);
# try creating single file hub.txt, one for hgwdev, one for hgdownload
my $downloadHubTxt = "$buildDir/${asmId}.download.hub.txt";
open (DL, ">$downloadHubTxt") or die "can not write to $downloadHubTxt";
$localHubTxt = "$buildDir/${asmId}.singleFile.hub.txt";
open (HT, ">$localHubTxt") or die "can not write to $localHubTxt";
writeHubTxtFiles(\*HT, \*DL, $accessionId, $orgName, $descr, $asmId, $asmDate,
$defPos, $taxId, $trackDb, $accessionDir, $buildDir, $chromAuthority,
$hugeGenome);
my $localGenomesFile = "$buildDir/${asmId}.genomes.txt";
open (GF, ">$localGenomesFile") or die "can not write to $localGenomesFile";
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