f1365818b0bbaf5b2c8ab01b848b26eec33be087
hiram
  Mon Jul 14 14:19:41 2025 -0700
Per advice from Francoise, do not override taxId for Bos indicus Bost taurus cross no redmine

diff --git src/hg/makeDb/doc/asmHubs/sciNameOverride.txt src/hg/makeDb/doc/asmHubs/sciNameOverride.txt
index fe019e974c7..f6ec38cd4f2 100644
--- src/hg/makeDb/doc/asmHubs/sciNameOverride.txt
+++ src/hg/makeDb/doc/asmHubs/sciNameOverride.txt
@@ -1,22 +1,24 @@
 #  override table for F1 cross hybrid assemblies where both haplotypes
 #   are individual assemblies.  Each individual assembly should have the
 #   correct scientific species name (and subsequent) taxId for the actual
 #   genome that it represents
 GCA_015852565.1	GCA_015852565.1_bf_hap-2	Branchiostoma floridae	7739
 GCA_019207075.1	GCA_019207075.1_Bb-hap	Branchiostoma belcheri	7741
-GCF_003369695.1	GCF_003369695.1_UOA_Brahman_1	Bos indicus	9915
-GCA_003369685.2	GCA_003369685.2_UOA_Angus_1	Bos taurus	9913
+
+# Francoise says not to do this: they should both be taxId 30522
+# GCF_003369695.1	GCF_003369695.1_UOA_Brahman_1	Bos indicus	9915
+# GCA_003369685.2	GCA_003369685.2_UOA_Angus_1	Bos taurus	9913
 
 
 # invertebrateAsmHub/invertebrate.orderList.tsv:GCA_019207075.1_Bb-hap	lancelets B.floridae x B.belcheri (bbbf 2021)
 # invertebrateAsmHub/invertebrate.orderList.tsv:GCA_015852565.1_bf_hap-2	lancelets B.floridae x B.japonicum (bjbf 2020)
 # invertebrateAsmHub/invertebrate.orderList.tsv:GCF_000209225.1_ASM20922v1	starlet sea anemone (CH2 x CH6 2007 JGI)
 # mammalsAsmHub/mammals.orderList.tsv:GCA_003369685.2_UOA_Angus_1	hybrid cattle (Angus x Brahman F1 Angus haplotype 2018)
 # mammalsAsmHub/mammals.orderList.tsv:GCF_003369695.1_UOA_Brahman_1	hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018)
 # mammalsAsmHub/mammals.orderList.tsv:GCF_029378745.1_NIAB-ARS_B.indTharparkar_mat_pri_1.0	zebu cattle (Sahiwal x Tharparkar maternal NIAB-ARS_2022 2023)
 # plantsAsmHub/plants.orderList.tsv:GCA_946000675.1_VITVix101-14Mgt_v1.0	eudicot V.riparia x Vitis rupestris (2022)
 # plantsAsmHub/plants.orderList.tsv:GCF_004785595.1_Jm3101_v1.0	J.microcarpa x regia eudicots (UCDavis 2019)
 # vgpAsmHub/vgp.alternate.orderList.tsv:GCA_003369685.2_UOA_Angus_1	hybrid cattle (Angus x Brahman F1 Angus haplotype 2018)
 # vgpAsmHub/vgp.primary.orderList.tsv:GCF_003369695.1_UOA_Brahman_1	hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018)
 # vgpAsmHub/vgp.primary.orderList.tsv:GCA_019207075.1_Bb-hap	lancelets B.floridae x B.belcheri (bbbf 2021)
 # vgpAsmHub/vgp.primary.orderList.tsv:GCA_015852565.1_bf_hap-2	lancelets B.floridae x B.japonicum (bjbf 2020)