87753ed6a5ebbc04ad58ab9a457b2fe403415b3a lrnassar Thu Jul 17 15:28:00 2025 -0700 Quietly retiring GBiB in favor of GBiC/docker, refs #35611 diff --git src/product/mirrorManual.txt src/product/mirrorManual.txt index 3ed7903d531..9c782fd8c28 100644 --- src/product/mirrorManual.txt +++ src/product/mirrorManual.txt @@ -122,36 +122,35 @@ rsync -hna --stats rsync://hgdownload.soe.ucsc.edu/gbdb/hg19/ | egrep "Number of files:|total size is" After running that command, you should see output like this: Number of files: 54886 total size is 6515.70G speedup is 5181080.38 (DRY RUN) The next command will give you the size of the entire mySQL/MariaDB database, but can be changed to get the size for a particular assembly: rsync -hna --stats rsync://hgdownload.soe.ucsc.edu/mysql/ | egrep "Number of files:|total size is" # Installing the UCSC Genome browser -Note: we offer Genome-Browser-in-a-Box (GBIB), a fully configured virtual -machine image that can be converted for VirtualBox, VMWare, Hyper-V and other -popular environments. We also offer Genome-Browser-in-the-Cloud (GBIC) an +**Note:** We offer Genome-Browser-in-the-Cloud (GBIC), an shell script that installs a genome browser in most main Linux distributions -(Most Debian and Redhat-based ones, like Ubuntu and CentOS). -See <https://genome.ucsc.edu/goldenPath/help/mirror.html> +(Most Debian and Redhat-based ones, like Ubuntu and CentOS). GBIC is also available +as a [dockerfile](/goldenPath/help/docker.html). +See our [mirror page](https://genome.ucsc.edu/goldenPath/help/mirror.html) for more general information. Scripts to perform all of the functions below can be found in the directory <https://github.com/ucscGenomeBrowser/kent/tree/master/src/product/scripts>. In a git clone of the kent repository, the scripts are located in src/product/scripts. Confirm the following: 1. Apache web server is installed and working, http://localhost/ provides the Apache default home page from your machine NOTE: The browser static html web pages require the Apache XBitHack option to be enabled to allow SSI <!--#include ... --> statements to function. Add 'Options +Includes' for your html directory, your httpd.conf file entry looks like: