7ed7d9175b7b6cec121e069a7501fd6c087faff8
jnavarr5
Tue Jul 1 15:11:06 2025 -0700
Using the new mouseOver trackDb setting for the DECIPHER CNV track, refs #36001
diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra
index 2e8b2499265..a3eec6d707e 100644
--- src/hg/makeDb/trackDb/human/decipher.ra
+++ src/hg/makeDb/trackDb/human/decipher.ra
@@ -1,79 +1,80 @@
track decipherContainer
superTrack on
shortLabel DECIPHER
longLabel DECIPHER
cartVersion 7
group phenDis
track decipher
priority 1
shortLabel DECIPHER CNVs
longLabel DECIPHER CNVs
group phenDis
visibility pack
type bigBed 9 +
itemRgb on
tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
url https://www.deciphergenomics.org/patient/$$
urlLabel Decipher Patient View:
filter.size 0
filterByRange.size on
filterLimits.size 2:170487333
filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
mergeSpannedItems on
searchIndex name
- mouseOverField _mouseOver
+ #mouseOverField _mouseOver
+ mouseOver Position: $chrom:${chromStart}-${chromEnd}
Size of Variant: $size
Genotype: $genotype
Variant Class: $variant_class
Inheritance: $inheritance
Pathogenicity: $pathogenicity
Phenotypes: $phenotypes
html decipherContainer
parent decipherContainer
track decipherSnvs
priority 2
shortLabel DECIPHER SNVs
longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
group phenDis
visibility pack
color 0,0,0
type bed 4
tableBrowser off decipherSnvsRaw
prevExonText Left edge
nextExonText Right edge
html decipherContainer
parent decipherContainer
track decipherPopulation
priority 3
parent decipherContainer
type bigBed 9 +
shortLabel DECIPHER Population CNVs
longLabel DECIPHER: Population CNVs
bigDataUrl /gbdb/$D/decipher/population_cnv.bb
visibility pack
mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer
searchIndex name
noScoreFilter on
filterValues.type loss,gain,del/dup
filter.sample_size 0
searchTable decipher
searchMethod exact
searchType bigBed
searchTable decipherDDG2P
searchMethod exact
searchType bigBed
searchName decipherId
searchTable decipher
termRegex [0-9]+
searchType bed
searchPriority 50
searchName decipherSnvsId
searchTable decipherSnvs
termRegex [0-9]+
searchType bed
searchPriority 50