7ed7d9175b7b6cec121e069a7501fd6c087faff8 jnavarr5 Tue Jul 1 15:11:06 2025 -0700 Using the new mouseOver trackDb setting for the DECIPHER CNV track, refs #36001 diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra index 2e8b2499265..a3eec6d707e 100644 --- src/hg/makeDb/trackDb/human/decipher.ra +++ src/hg/makeDb/trackDb/human/decipher.ra @@ -1,79 +1,80 @@ track decipherContainer superTrack on shortLabel DECIPHER longLabel DECIPHER cartVersion 7 group phenDis track decipher priority 1 shortLabel DECIPHER CNVs longLabel DECIPHER CNVs group phenDis visibility pack type bigBed 9 + itemRgb on tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw bigDataUrl /gbdb/$D/decipher/decipherCnv.bb url https://www.deciphergenomics.org/patient/$$ urlLabel Decipher Patient View: filter.size 0 filterByRange.size on filterLimits.size 2:170487333 filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown mergeSpannedItems on searchIndex name - mouseOverField _mouseOver + #mouseOverField _mouseOver + mouseOver Position: $chrom:${chromStart}-${chromEnd}
Size of Variant: $size
Genotype: $genotype
Variant Class: $variant_class
Inheritance: $inheritance
Pathogenicity: $pathogenicity
Phenotypes: $phenotypes
html decipherContainer parent decipherContainer track decipherSnvs priority 2 shortLabel DECIPHER SNVs longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) group phenDis visibility pack color 0,0,0 type bed 4 tableBrowser off decipherSnvsRaw prevExonText Left edge nextExonText Right edge html decipherContainer parent decipherContainer track decipherPopulation priority 3 parent decipherContainer type bigBed 9 + shortLabel DECIPHER Population CNVs longLabel DECIPHER: Population CNVs bigDataUrl /gbdb/$D/decipher/population_cnv.bb visibility pack mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer searchIndex name noScoreFilter on filterValues.type loss,gain,del/dup filter.sample_size 0 searchTable decipher searchMethod exact searchType bigBed searchTable decipherDDG2P searchMethod exact searchType bigBed searchName decipherId searchTable decipher termRegex [0-9]+ searchType bed searchPriority 50 searchName decipherSnvsId searchTable decipherSnvs termRegex [0-9]+ searchType bed searchPriority 50