Commits for braney

v485_preview to v485_preview2 (2025-07-07 to 2025-07-14) v485

ae09c0590da3e36fdf30c30fcec71c6aa3374663 Tue Jul 8 16:32:42 2025 -0700

• fix bugs in quickLift refs #35609
  • src/hg/hgConvert/hgConvert.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/rnaStructure.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c - lines changed 15, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 3, context: html, text, full: html, text

f577b4c8199360dac5b955dfc4ede99d57c2946f Wed Jul 9 16:57:59 2025 -0700

• ongoing work on quickLift, including displaying mismatches
  • src/hg/hgTracks/bedTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/quickLift.c - lines changed 75, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 13, context: html, text, full: html, text

7e309c4dfe387978e9abdddeca1b52a015091572 Wed Jul 9 17:46:54 2025 -0700

• oops.. remove unused variables
  • src/hg/hgTracks/quickLift.c - lines changed 2, context: html, text, full: html, text

1a436460e21282899ff825bab22f137123564e68 Wed Jul 9 18:08:06 2025 -0700

• a fix for quickLift mismatches on the negative strand
  • src/hg/hgTracks/quickLift.c - lines changed 8, context: html, text, full: html, text

2bc4d4c29bb6270454b0945bb475f1b78bea0e08 Thu Jul 10 15:43:34 2025 -0700

• some boiler plate for bedMethyl doc
  • src/hg/htdocs/FAQ/FAQformat.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bedMethyl.html - lines changed 13, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/customTrackText.html - lines changed 11, context: html, text, full: html, text

94c8445567840aa5b08fd090a7f51508bd15b89f Sun Jul 13 12:18:03 2025 -0700

• adding bigMethyl.html so it will install
  • src/hg/htdocs/goldenPath/help/bigMethyl.html - lines changed 81, context: html, text, full: html, text

9a051963c7dc7cafea316417701cae4570aff029 Sun Jul 13 13:07:07 2025 -0700

• templates for bedMethyl and bigMethyl
  • src/hg/htdocs/goldenPath/help/api.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bedMethyl.html - lines changed 32, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigMethyl.html - lines changed 42, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/customTrackText.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 9, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 16, context: html, text, full: html, text