9bc72b8d97e6fdd1f64881e08db9e9ac33d26bd3 gperez2 Fri Aug 8 14:05:51 2025 -0700 Releasing and announcing the PanelApp Australia track, refs #35758 diff --git src/hg/makeDb/trackDb/human/panelApp.ra src/hg/makeDb/trackDb/human/panelApp.ra index 97e65d61e78..87c14234908 100644 --- src/hg/makeDb/trackDb/human/panelApp.ra +++ src/hg/makeDb/trackDb/human/panelApp.ra @@ -1,53 +1,121 @@ track panelApp shortLabel PanelApp -longLabel Genomics England PanelApp Diagnostics +longLabel Genomics England and Australia PanelApp Diagnostics type bigBed 9 + visibility hide group phenDis compositeTrack on +noParentConfig on +showCfg on +pennantIcon Updated red ../goldenPath/newsarch.html#080825 "PanelApp Australia released Aug. 08, 2025" track panelAppGenes parent panelApp on - shortLabel PanelApp Genes + shortLabel PanelApp GE Genes longLabel Genomics England PanelApp Genes type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/genes.bb itemRgb on url https://panelapp.genomicsengland.co.uk/panels/$/gene/$/ urlLabel Link to PanelApp urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" - mouseOverField mouseOverField + mouseOver Gene: $entityName
Panel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel labelFields geneSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField filterValues.confidenceLevel 3,2,1,0 + priority 1 + filter.panelVersion 1 + filterLabel.panelVersion Minimum panel version to display + + track panelAppCNVs + parent panelApp on + shortLabel PanelApp GE CNVs + longLabel Genomics England PanelApp CNV Regions + type bigBed 9 + + visibility pack + bigDataUrl /gbdb/$D/panelApp/cnv.bb + itemRgb on + urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$" + labelFields entityName + skipEmptyFields on + mouseOver Gene: $entityName
Panel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel + skipFields chrom,chromStart,blockStarts,blockSizes + filterValues.confidenceLevel 3,2,1,0 + priority 2 + filter.versionCreated 1 + filterLabel.versionCreated Minimum panel version to display track panelAppTandRep parent panelApp on - shortLabel PanelApp STRs + shortLabel PanelApp GE STRs longLabel Genomics England PanelApp Short Tandem Repeats type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/tandRep.bb itemRgb on - urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" - mouseOverField mouseOverField + urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" labelFields hgncSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField filterValues.confidenceLevel 3,2,1,0 + mouseOver Gene name: $geneName
Panel: $name
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel + priority 3 + filter.version 1 + filterLabel.version Minimum panel version to display - track panelAppCNVs + track panelAppAusGenes parent panelApp on - shortLabel PanelApp CNVs - longLabel Genomics England PanelApp CNV Regions + shortLabel PanelApp Australia Genes + longLabel PanelApp Australia Genes Panels type bigBed 9 + visibility pack - bigDataUrl /gbdb/$D/panelApp/cnv.bb + bigDataUrl /gbdb/$D/panelApp/genesAus.bb + url https://panelapp-aus.org/panels/$/gene/$/ + urlLabel Link to PanelApp Australia + urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp-aus.org/panels/$$/" geneSymbol="https://panelapp-aus.org/panels/entities/$$" + mouseOver Gene: $entityName
Panel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel + labelFields geneSymbol + skipEmptyFields on + skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField + filterValues.confidenceLevel 3,2,1,0 + filter.panelVersion 0 + filterLabel.panelVersion Minimum panel version to display + priority 4 + + track panelAppAusCNVs + parent panelApp on + shortLabel PanelApp Australia CNVs + longLabel PanelApp Australia CNV Regions + type bigBed 9 + + visibility pack + bigDataUrl /gbdb/$D/panelApp/cnvAus.bb itemRgb on - urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$" + urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp-aus.org/panels/$$/" entityName="https://panelapp-aus.org/panels/entities/$$" labelFields entityName skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes + mouseOver Gene: $entityName
Panel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel + filterValues.confidenceLevel 3,2,1,0 + filter.versionCreated 0 + filterLabel.versionCreated Minimum panel version to display + priority 5 + + track panelAppAusTandRep + parent panelApp on + shortLabel PanelApp Australia STRs + longLabel PanelApp Australia Short Tandem Repeats + type bigBed 9 + + visibility pack + bigDataUrl /gbdb/$D/panelApp/tandRepAus.bb + itemRgb on + urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" panelID="https://panelapp-aus.org/panels/$$/" geneSymbol="https://panelapp-aus.org/panels/entities/$$" + mouseOver Gene name: $geneName
Panel: $name
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel + labelFields hgncSymbol + skipEmptyFields on + skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField filterValues.confidenceLevel 3,2,1,0 + priority 6 + filter.version 0 + filterLabel.version Minimum panel version to display