003337bf766f61f102c61cb924af98ad09372ad0
markd
  Tue Aug 5 12:41:24 2025 -0700
added size and splice junction filters to recount3

diff --git src/hg/lib/recount3.as src/hg/lib/recount3.as
index d753d277b55..bd2e9363a87 100644
--- src/hg/lib/recount3.as
+++ src/hg/lib/recount3.as
@@ -1,18 +1,20 @@
 table recount3
 "Bed 9+6 file for NCBI orthologs"
     (
     string chrom;      "Reference sequence chromosome or scaffold"
     uint   chromStart; "Start position in chromosome"
     uint   chromEnd;   "End position in chromosome"
     string name;       "Short Name of item"
     uint   score;      "Score from 0-1000"
     char[1] strand;    "+ or -"
     uint thickStart;   "Start of where display should be thick"
     uint thickEnd;     "End of where display should be thick"
     uint reserved;     "Used as itemRgb as of 2004-11-22"
+    uint size;         "Size of the intron"
     bigint readcount;  "Read count"
     uint samplecount;  "Sample count"
     string donor;      "Splice donor"
     string acceptor;   "Splice acceptor"
     string url;        "URL"
+    string sjPair;     "Splice junctions in format 'GT/AG' for filtering"
     )